Variant report

Variant	rs2691089
Chromosome Location	chr3:81911764-81911765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11925940	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12495343	0.91[EUR][1000 genomes]
rs12635671	0.91[EUR][1000 genomes]
rs1404297	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1829967	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851917	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1971426	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1973800	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1973801	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1973803	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1973804	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1997002	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2030708	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2244294	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2252530	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2594558	0.89[EUR][1000 genomes]
rs2594562	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2680245	0.89[EUR][1000 genomes]
rs2680246	0.89[EUR][1000 genomes]
rs2680260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2680274	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2680277	0.90[EUR][1000 genomes]
rs2680280	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2691077	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691078	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691079	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691080	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691083	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2691085	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2691093	0.90[EUR][1000 genomes]
rs4273393	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4479621	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6774438	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6803932	0.90[EUR][1000 genomes]
rs7611902	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653333	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs950904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs957670	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9822266	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832088	0.80[EUR][1000 genomes]
rs9860204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81909000-81913000	Weak transcription	Fetal Lung	lung
2	chr3:81909600-81912800	Weak transcription	HUVEC	blood vessel
3	chr3:81910400-81913000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:81910400-81915000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:81911000-81913000	Weak transcription	Fetal Heart	heart
6	chr3:81911000-81914200	Enhancers	Dnd41	blood

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