Variant report
Variant | rs2693359 |
---|---|
Chromosome Location | chr17:43661751-43661752 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:352)
- CpG islands (count:0)
- Chromatin interactive region (count:12)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | POLR2A | chr17:43661543-43662878 | H1-hESC | embryonic stem cell: | n/a | n/a |
2 | POLR2A | chr17:43661694-43662896 | K562 | blood: | n/a | n/a |
3 | EP300 | chr17:43660515-43661858 | Hela-S3 | cervix: | n/a | n/a |
4 | TCF12 | chr17:43660914-43662182 | A549 | lung: | n/a | chr17:43660937-43660946 chr17:43662043-43662053 |
5 | SMC3 | chr17:43661507-43662150 | GM12878 | blood: | n/a | n/a |
6 | YY1 | chr17:43661652-43662725 | K562 | blood: | n/a | chr17:43662431-43662442 chr17:43662319-43662330 chr17:43662313-43662327 |
7 | POLR2A | chr17:43660775-43662912 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | ETS1 | chr17:43661287-43662115 | A549 | lung: | n/a | n/a |
9 | TAF1 | chr17:43661560-43662260 | H1-neurons | neurons: | n/a | n/a |
10 | TEAD4 | chr17:43661612-43662123 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | E2F4 | chr17:43661521-43662088 | Hela-S3 | cervix: | n/a | chr17:43661694-43661706 chr17:43661688-43661703 |
12 | RCOR1 | chr17:43660908-43662212 | K562 | blood: | n/a | n/a |
13 | CHD2 | chr17:43661607-43662738 | Hela-S3 | cervix: | n/a | chr17:43661690-43661700 chr17:43662590-43662600 |
14 | E2F4 | chr17:43661593-43662005 | GM12878 | blood: | n/a | chr17:43661694-43661706 chr17:43661688-43661703 |
15 | POLR2A | chr17:43661536-43663039 | A549 | lung: | n/a | n/a |
16 | RUNX3 | chr17:43660921-43662869 | GM12878 | blood: | n/a | n/a |
17 | YY1 | chr17:43661565-43663026 | GM12878 | blood: | n/a | chr17:43662431-43662442 chr17:43662319-43662330 chr17:43662313-43662327 |
18 | MAX | chr17:43661499-43662337 | ECC-1 | luminal epithelium: | n/a | n/a |
19 | EBF1 | chr17:43661535-43662955 | GM12878 | blood: | n/a | chr17:43662881-43662891 chr17:43662879-43662890 |
20 | ZMIZ1 | chr17:43661703-43662208 | K562 | blood: | n/a | n/a |
21 | ARID3A | chr17:43660962-43661976 | K562 | blood: | n/a | n/a |
22 | MAX | chr17:43661506-43661884 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | TAF1 | chr17:43661308-43662336 | PFSK-1 | brain: | n/a | n/a |
24 | TAF1 | chr17:43661464-43662928 | H1-hESC | embryonic stem cell: | n/a | n/a |
25 | ETS1 | chr17:43660932-43662282 | A549 | lung: | n/a | n/a |
26 | ZNF384 | chr17:43660974-43661993 | GM12878 | blood: | n/a | n/a |
27 | PML | chr17:43661585-43662173 | GM12878 | blood: | n/a | n/a |
28 | POLR2A | chr17:43661709-43662897 | MCF-7 | breast: | n/a | n/a |
29 | CREB1 | chr17:43661599-43662822 | A549 | lung: | n/a | n/a |
30 | EP300 | chr17:43660488-43662093 | K562 | blood: | n/a | n/a |
31 | MAX | chr17:43660888-43662771 | Hela-S3 | cervix: | n/a | chr17:43660955-43660964 chr17:43662554-43662567 chr17:43662556-43662565 |
32 | TAF1 | chr17:43661588-43662841 | GM12878 | blood: | n/a | n/a |
33 | SIN3AK20 | chr17:43661574-43662199 | K562 | blood: | n/a | n/a |
34 | EBF1 | chr17:43661569-43662267 | GM12878 | blood: | n/a | n/a |
35 | SP4 | chr17:43661158-43662220 | H1-hESC | embryonic stem cell: | n/a | n/a |
36 | SIX5 | chr17:43660181-43663228 | A549 | lung: | n/a | chr17:43661141-43661155 |
37 | POLR2A | chr17:43661592-43662848 | K562 | blood: | n/a | n/a |
38 | MAX | chr17:43661484-43662266 | A549 | lung: | n/a | n/a |
39 | GTF2F1 | chr17:43661748-43662008 | K562 | blood: | n/a | n/a |
40 | ATF2 | chr17:43660922-43662038 | H1-hESC | embryonic stem cell: | n/a | n/a |
41 | YY1 | chr17:43661580-43662875 | GM12892 | blood: | n/a | chr17:43662431-43662442 chr17:43662319-43662330 chr17:43662313-43662327 |
42 | RCOR1 | chr17:43660450-43662743 | GM12878 | blood: | n/a | n/a |
43 | UBTF | chr17:43660874-43662831 | K562 | blood: | n/a | n/a |
44 | TBP | chr17:43661598-43662086 | HepG2 | liver: | n/a | n/a |
45 | POLR2A | chr17:43661542-43662996 | GM12892 | blood: | n/a | n/a |
46 | CHD2 | chr17:43661520-43662156 | H1-hESC | embryonic stem cell: | n/a | chr17:43661690-43661700 |
47 | POLR2A | chr17:43661552-43662864 | ECC-1 | luminal epithelium: | n/a | n/a |
48 | MAZ | chr17:43661681-43662745 | K562 | blood: | n/a | chr17:43662554-43662567 chr17:43662556-43662565 |
49 | POLR2A | chr17:43661702-43662803 | HUVEC | blood vessel: | n/a | n/a |
50 | BCL3 | chr17:43660803-43662256 | A549 | lung: | n/a | chr17:43660958-43660967 |
No data |
(count:12 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:43659360..43661932-chr17:44286698..44288296,2 | K562 | blood: | |
2 | chr17:43659845..43663705-chr17:62914069..62917954,5 | K562 | blood: | |
3 | chr17:43660094..43663642-chr17:44267773..44272304,6 | K562 | blood: | |
4 | chr17:43655653..43657748-chr17:43659678..43662421,2 | K562 | blood: | |
5 | chr17:43660319..43662711-chr17:44192008..44194558,2 | K562 | blood: | |
6 | chr17:43660175..43663705-chr17:62914069..62915711,3 | K562 | blood: | |
7 | chr17:43661600..43664224-chr17:62914176..62915865,6 | MCF-7 | breast: | |
8 | chr17:43660518..43663332-chr17:44270073..44271774,2 | MCF-7 | breast: | |
9 | chr17:43660094..43663642-chr17:44269227..44273306,6 | K562 | blood: | |
10 | chr17:43661202..43663303-chr17:44342809..44346012,4 | K562 | blood: | |
11 | chr17:43649584..43651317-chr17:43660894..43663206,2 | K562 | blood: | |
12 | chr17:43661615..43662517-chr5:108063639..108064532,2 | Hela-S3 | cervix: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
DND1P1 | TF binding region |
ENSG00000272523 | Chromatin interaction |
ENSG00000214401 | Chromatin interaction |
ENSG00000176809 | Chromatin interaction |
ENSG00000120071 | Chromatin interaction |
ENSG00000261575 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10451283 | 1.00[ASN][1000 genomes] |
rs11012 | 1.00[ASN][1000 genomes] |
rs1105569 | 1.00[ASN][1000 genomes] |
rs1105570 | 1.00[ASN][1000 genomes] |
rs1105571 | 1.00[ASN][1000 genomes] |
rs11079717 | 1.00[ASN][1000 genomes] |
rs12150048 | 1.00[ASN][1000 genomes] |
rs12150332 | 1.00[ASN][1000 genomes] |
rs12150363 | 1.00[ASN][1000 genomes] |
rs12150451 | 1.00[ASN][1000 genomes] |
rs12150455 | 1.00[ASN][1000 genomes] |
rs12150604 | 1.00[ASN][1000 genomes] |
rs12150621 | 1.00[ASN][1000 genomes] |
rs12150658 | 1.00[ASN][1000 genomes] |
rs12150672 | 1.00[ASN][1000 genomes] |
rs12150683 | 1.00[ASN][1000 genomes] |
rs12452273 | 1.00[ASN][1000 genomes] |
rs12939187 | 1.00[ASN][1000 genomes] |
rs12940792 | 1.00[ASN][1000 genomes] |
rs12942666 | 1.00[ASN][1000 genomes] |
rs12942951 | 1.00[ASN][1000 genomes] |
rs12943085 | 1.00[ASN][1000 genomes] |
rs12946900 | 1.00[ASN][1000 genomes] |
rs12947718 | 1.00[ASN][1000 genomes] |
rs12948216 | 1.00[ASN][1000 genomes] |
rs12950965 | 1.00[ASN][1000 genomes] |
rs12952764 | 1.00[ASN][1000 genomes] |
rs1526125 | 1.00[ASN][1000 genomes] |
rs1526126 | 1.00[ASN][1000 genomes] |
rs1568949 | 1.00[ASN][1000 genomes] |
rs1568950 | 1.00[ASN][1000 genomes] |
rs1568951 | 1.00[ASN][1000 genomes] |
rs1608955 | 1.00[ASN][1000 genomes] |
rs1608956 | 1.00[ASN][1000 genomes] |
rs16940633 | 1.00[ASN][1000 genomes] |
rs1706748 | 1.00[ASN][1000 genomes] |
rs17334797 | 1.00[ASN][1000 genomes] |
rs17334894 | 1.00[ASN][1000 genomes] |
rs17334923 | 1.00[ASN][1000 genomes] |
rs17334944 | 1.00[ASN][1000 genomes] |
rs17426064 | 1.00[ASN][1000 genomes] |
rs17426106 | 1.00[ASN][1000 genomes] |
rs17426174 | 1.00[ASN][1000 genomes] |
rs17426195 | 1.00[ASN][1000 genomes] |
rs17563599 | 1.00[ASN][1000 genomes] |
rs17563683 | 1.00[ASN][1000 genomes] |
rs17563718 | 1.00[ASN][1000 genomes] |
rs17563787 | 1.00[ASN][1000 genomes] |
rs17563800 | 1.00[ASN][1000 genomes] |
rs17563827 | 1.00[ASN][1000 genomes] |
rs17563861 | 1.00[ASN][1000 genomes] |
rs17563889 | 1.00[ASN][1000 genomes] |
rs17563923 | 1.00[ASN][1000 genomes] |
rs17631303 | 1.00[ASN][1000 genomes] |
rs17631676 | 1.00[ASN][1000 genomes] |
rs17649138 | 1.00[ASN][1000 genomes] |
rs17649162 | 1.00[ASN][1000 genomes] |
rs17686610 | 1.00[ASN][1000 genomes] |
rs17687462 | 1.00[ASN][1000 genomes] |
rs17687504 | 1.00[ASN][1000 genomes] |
rs17687534 | 1.00[ASN][1000 genomes] |
rs17687571 | 1.00[ASN][1000 genomes] |
rs17687625 | 1.00[ASN][1000 genomes] |
rs17687667 | 1.00[ASN][1000 genomes] |
rs17687740 | 1.00[ASN][1000 genomes] |
rs17687838 | 1.00[ASN][1000 genomes] |
rs17687849 | 1.00[ASN][1000 genomes] |
rs17688002 | 1.00[ASN][1000 genomes] |
rs17688032 | 1.00[ASN][1000 genomes] |
rs17688056 | 1.00[ASN][1000 genomes] |
rs17688068 | 1.00[ASN][1000 genomes] |
rs17688090 | 1.00[ASN][1000 genomes] |
rs17688126 | 1.00[ASN][1000 genomes] |
rs17688205 | 1.00[ASN][1000 genomes] |
rs17688249 | 1.00[ASN][1000 genomes] |
rs17688296 | 1.00[ASN][1000 genomes] |
rs17688767 | 1.00[ASN][1000 genomes] |
rs17688773 | 1.00[ASN][1000 genomes] |
rs17688875 | 1.00[ASN][1000 genomes] |
rs17688916 | 1.00[ASN][1000 genomes] |
rs17688922 | 1.00[ASN][1000 genomes] |
rs17688944 | 1.00[ASN][1000 genomes] |
rs17689104 | 1.00[ASN][1000 genomes] |
rs17689116 | 1.00[ASN][1000 genomes] |
rs17689182 | 1.00[ASN][1000 genomes] |
rs17689218 | 1.00[ASN][1000 genomes] |
rs17760577 | 1.00[ASN][1000 genomes] |
rs17760631 | 1.00[ASN][1000 genomes] |
rs17760733 | 1.00[ASN][1000 genomes] |
rs17760817 | 1.00[ASN][1000 genomes] |
rs17761046 | 1.00[ASN][1000 genomes] |
rs17761100 | 1.00[ASN][1000 genomes] |
rs17761124 | 1.00[ASN][1000 genomes] |
rs17761207 | 1.00[ASN][1000 genomes] |
rs17761387 | 1.00[ASN][1000 genomes] |
rs17761581 | 1.00[ASN][1000 genomes] |
rs17762073 | 1.00[ASN][1000 genomes] |
rs17762165 | 1.00[ASN][1000 genomes] |
rs17762308 | 1.00[ASN][1000 genomes] |
rs17762361 | 1.00[ASN][1000 genomes] |
rs17762535 | 1.00[ASN][1000 genomes] |
rs1879581 | 1.00[ASN][1000 genomes] |
rs1879582 | 1.00[ASN][1000 genomes] |
rs1879585 | 1.00[ASN][1000 genomes] |
rs1879586 | 1.00[ASN][1000 genomes] |
rs1880749 | 1.00[ASN][1000 genomes] |
rs1880750 | 1.00[ASN][1000 genomes] |
rs1880752 | 1.00[ASN][1000 genomes] |
rs1971374 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2004260 | 1.00[ASN][1000 genomes] |
rs2028078 | 1.00[ASN][1000 genomes] |
rs2077606 | 1.00[ASN][1000 genomes] |
rs2090847 | 1.00[ASN][1000 genomes] |
rs2139890 | 1.00[ASN][1000 genomes] |
rs2253488 | 1.00[ASN][1000 genomes] |
rs241020 | 1.00[ASN][1000 genomes] |
rs241021 | 1.00[ASN][1000 genomes] |
rs241028 | 1.00[ASN][1000 genomes] |
rs241032 | 1.00[ASN][1000 genomes] |
rs241033 | 1.00[ASN][1000 genomes] |
rs241041 | 1.00[ASN][1000 genomes] |
rs2458179 | 1.00[ASN][1000 genomes] |
rs2458187 | 1.00[ASN][1000 genomes] |
rs2462835 | 1.00[ASN][1000 genomes] |
rs2463523 | 1.00[ASN][1000 genomes] |
rs2668644 | 1.00[ASN][1000 genomes] |
rs2684526 | 1.00[ASN][1000 genomes] |
rs2693362 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28439278 | 1.00[ASN][1000 genomes] |
rs2864087 | 1.00[ASN][1000 genomes] |
rs2902661 | 1.00[ASN][1000 genomes] |
rs2902662 | 1.00[ASN][1000 genomes] |
rs2942164 | 1.00[ASN][1000 genomes] |
rs2942165 | 1.00[ASN][1000 genomes] |
rs2942166 | 1.00[ASN][1000 genomes] |
rs2942167 | 1.00[ASN][1000 genomes] |
rs2942168 | 1.00[ASN][1000 genomes] |
rs2942169 | 1.00[ASN][1000 genomes] |
rs2942170 | 1.00[ASN][1000 genomes] |
rs2959992 | 1.00[ASN][1000 genomes] |
rs2960000 | 1.00[ASN][1000 genomes] |
rs3108317 | 1.00[ASN][1000 genomes] |
rs34008514 | 1.00[ASN][1000 genomes] |
rs34018943 | 1.00[ASN][1000 genomes] |
rs34063617 | 1.00[ASN][1000 genomes] |
rs34104358 | 1.00[ASN][1000 genomes] |
rs3418 | 1.00[ASN][1000 genomes] |
rs34195569 | 1.00[ASN][1000 genomes] |
rs34211253 | 1.00[ASN][1000 genomes] |
rs34286926 | 1.00[ASN][1000 genomes] |
rs34363898 | 1.00[ASN][1000 genomes] |
rs34465449 | 1.00[ASN][1000 genomes] |
rs34579278 | 1.00[ASN][1000 genomes] |
rs34792542 | 1.00[ASN][1000 genomes] |
rs34887474 | 1.00[ASN][1000 genomes] |
rs34915103 | 1.00[ASN][1000 genomes] |
rs35282504 | 1.00[ASN][1000 genomes] |
rs35327136 | 1.00[ASN][1000 genomes] |
rs35389313 | 1.00[ASN][1000 genomes] |
rs35489312 | 1.00[ASN][1000 genomes] |
rs35519908 | 1.00[ASN][1000 genomes] |
rs35631660 | 1.00[ASN][1000 genomes] |
rs35879086 | 1.00[ASN][1000 genomes] |
rs35884427 | 1.00[ASN][1000 genomes] |
rs36047693 | 1.00[ASN][1000 genomes] |
rs36078910 | 1.00[ASN][1000 genomes] |
rs36114997 | 1.00[ASN][1000 genomes] |
rs365825 | 1.00[ASN][1000 genomes] |
rs383241 | 1.00[ASN][1000 genomes] |
rs385691 | 1.00[ASN][1000 genomes] |
rs389217 | 1.00[ASN][1000 genomes] |
rs389978 | 1.00[ASN][1000 genomes] |
rs392116 | 1.00[ASN][1000 genomes] |
rs393152 | 1.00[ASN][1000 genomes] |
rs393675 | 1.00[ASN][1000 genomes] |
rs393838 | 1.00[ASN][1000 genomes] |
rs3946526 | 1.00[ASN][1000 genomes] |
rs396593 | 1.00[ASN][1000 genomes] |
rs3972613 | 1.00[ASN][1000 genomes] |
rs413778 | 1.00[ASN][1000 genomes] |
rs413917 | 1.00[ASN][1000 genomes] |
rs422112 | 1.00[ASN][1000 genomes] |
rs424243 | 1.00[ASN][1000 genomes] |
rs434428 | 1.00[ASN][1000 genomes] |
rs434598 | 1.00[ASN][1000 genomes] |
rs434805 | 1.00[ASN][1000 genomes] |
rs434971 | 1.00[ASN][1000 genomes] |
rs4390635 | 1.00[ASN][1000 genomes] |
rs439558 | 1.00[ASN][1000 genomes] |
rs4401083 | 1.00[ASN][1000 genomes] |
rs4471726 | 1.00[ASN][1000 genomes] |
rs4479288 | 1.00[ASN][1000 genomes] |
rs4479289 | 1.00[ASN][1000 genomes] |
rs448830 | 1.00[ASN][1000 genomes] |
rs4569335 | 1.00[ASN][1000 genomes] |
rs4605208 | 1.00[ASN][1000 genomes] |
rs4609898 | 1.00[ASN][1000 genomes] |
rs4609899 | 1.00[ASN][1000 genomes] |
rs4617909 | 1.00[ASN][1000 genomes] |
rs4763 | 1.00[ASN][1000 genomes] |
rs5026246 | 1.00[ASN][1000 genomes] |
rs55642947 | 1.00[ASN][1000 genomes] |
rs55643511 | 1.00[ASN][1000 genomes] |
rs55645418 | 1.00[ASN][1000 genomes] |
rs55648326 | 1.00[ASN][1000 genomes] |
rs55651627 | 1.00[ASN][1000 genomes] |
rs55652155 | 1.00[ASN][1000 genomes] |
rs55653963 | 1.00[ASN][1000 genomes] |
rs55663797 | 1.00[ASN][1000 genomes] |
rs55669046 | 1.00[ASN][1000 genomes] |
rs55671319 | 1.00[ASN][1000 genomes] |
rs55688739 | 1.00[ASN][1000 genomes] |
rs55703888 | 1.00[ASN][1000 genomes] |
rs55746869 | 1.00[ASN][1000 genomes] |
rs55747440 | 1.00[ASN][1000 genomes] |
rs55787734 | 1.00[ASN][1000 genomes] |
rs55790407 | 1.00[ASN][1000 genomes] |
rs55793500 | 1.00[ASN][1000 genomes] |
rs55801356 | 1.00[ASN][1000 genomes] |
rs55849973 | 1.00[ASN][1000 genomes] |
rs55896111 | 1.00[ASN][1000 genomes] |
rs55914643 | 1.00[ASN][1000 genomes] |
rs55925547 | 1.00[ASN][1000 genomes] |
rs55947210 | 1.00[ASN][1000 genomes] |
rs55962674 | 1.00[ASN][1000 genomes] |
rs55972157 | 1.00[ASN][1000 genomes] |
rs55973918 | 1.00[ASN][1000 genomes] |
rs55974014 | 1.00[ASN][1000 genomes] |
rs55980621 | 1.00[ASN][1000 genomes] |
rs55989971 | 1.00[ASN][1000 genomes] |
rs56005713 | 1.00[ASN][1000 genomes] |
rs56006248 | 1.00[ASN][1000 genomes] |
rs56013908 | 1.00[ASN][1000 genomes] |
rs56015792 | 1.00[ASN][1000 genomes] |
rs56046792 | 1.00[ASN][1000 genomes] |
rs56062621 | 1.00[ASN][1000 genomes] |
rs56100013 | 1.00[ASN][1000 genomes] |
rs56110538 | 1.00[ASN][1000 genomes] |
rs56159231 | 1.00[ASN][1000 genomes] |
rs56160448 | 1.00[ASN][1000 genomes] |
rs56167344 | 1.00[ASN][1000 genomes] |
rs56167560 | 1.00[ASN][1000 genomes] |
rs56168907 | 1.00[ASN][1000 genomes] |
rs56168933 | 1.00[ASN][1000 genomes] |
rs56178230 | 1.00[ASN][1000 genomes] |
rs56192752 | 1.00[ASN][1000 genomes] |
rs56205560 | 1.00[ASN][1000 genomes] |
rs56212100 | 1.00[ASN][1000 genomes] |
rs56214516 | 1.00[ASN][1000 genomes] |
rs56220242 | 1.00[ASN][1000 genomes] |
rs56220387 | 1.00[ASN][1000 genomes] |
rs56236914 | 1.00[ASN][1000 genomes] |
rs56295996 | 1.00[ASN][1000 genomes] |
rs56298110 | 1.00[ASN][1000 genomes] |
rs56323722 | 1.00[ASN][1000 genomes] |
rs56323832 | 1.00[ASN][1000 genomes] |
rs56328224 | 1.00[ASN][1000 genomes] |
rs56378631 | 1.00[ASN][1000 genomes] |
rs56380663 | 1.00[ASN][1000 genomes] |
rs56384960 | 1.00[ASN][1000 genomes] |
rs56397077 | 1.00[ASN][1000 genomes] |
rs56400821 | 1.00[ASN][1000 genomes] |
rs56406407 | 1.00[ASN][1000 genomes] |
rs593720 | 1.00[ASN][1000 genomes] |
rs61667602 | 1.00[ASN][1000 genomes] |
rs62053939 | 1.00[ASN][1000 genomes] |
rs62053940 | 1.00[ASN][1000 genomes] |
rs62053943 | 1.00[ASN][1000 genomes] |
rs62053945 | 1.00[ASN][1000 genomes] |
rs62053946 | 1.00[ASN][1000 genomes] |
rs62053947 | 1.00[ASN][1000 genomes] |
rs62053948 | 1.00[ASN][1000 genomes] |
rs62053949 | 1.00[ASN][1000 genomes] |
rs62053950 | 1.00[ASN][1000 genomes] |
rs62053951 | 1.00[ASN][1000 genomes] |
rs62053952 | 1.00[ASN][1000 genomes] |
rs62053953 | 1.00[ASN][1000 genomes] |
rs62053954 | 1.00[ASN][1000 genomes] |
rs62053955 | 1.00[ASN][1000 genomes] |
rs62053956 | 1.00[ASN][1000 genomes] |
rs62053957 | 1.00[ASN][1000 genomes] |
rs62053958 | 1.00[ASN][1000 genomes] |
rs62053959 | 1.00[ASN][1000 genomes] |
rs62054372 | 1.00[ASN][1000 genomes] |
rs62054378 | 1.00[ASN][1000 genomes] |
rs62054384 | 1.00[ASN][1000 genomes] |
rs62054387 | 1.00[ASN][1000 genomes] |
rs62054388 | 1.00[ASN][1000 genomes] |
rs62054389 | 1.00[ASN][1000 genomes] |
rs62054392 | 1.00[ASN][1000 genomes] |
rs62054393 | 1.00[ASN][1000 genomes] |
rs62054394 | 1.00[ASN][1000 genomes] |
rs62054395 | 1.00[ASN][1000 genomes] |
rs62054396 | 1.00[ASN][1000 genomes] |
rs62054397 | 1.00[ASN][1000 genomes] |
rs62054398 | 1.00[ASN][1000 genomes] |
rs62054399 | 1.00[ASN][1000 genomes] |
rs62054400 | 1.00[ASN][1000 genomes] |
rs62054411 | 1.00[ASN][1000 genomes] |
rs62054412 | 1.00[ASN][1000 genomes] |
rs62054413 | 1.00[ASN][1000 genomes] |
rs62054414 | 1.00[ASN][1000 genomes] |
rs62054417 | 1.00[ASN][1000 genomes] |
rs62054418 | 1.00[ASN][1000 genomes] |
rs62054419 | 1.00[ASN][1000 genomes] |
rs62054421 | 1.00[ASN][1000 genomes] |
rs62054424 | 1.00[ASN][1000 genomes] |
rs62054425 | 1.00[ASN][1000 genomes] |
rs62054426 | 1.00[ASN][1000 genomes] |
rs62054427 | 1.00[ASN][1000 genomes] |
rs62054428 | 1.00[ASN][1000 genomes] |
rs62054429 | 1.00[ASN][1000 genomes] |
rs62054431 | 1.00[ASN][1000 genomes] |
rs62054432 | 1.00[ASN][1000 genomes] |
rs62054433 | 1.00[ASN][1000 genomes] |
rs62054434 | 1.00[ASN][1000 genomes] |
rs62054435 | 1.00[ASN][1000 genomes] |
rs62054436 | 1.00[ASN][1000 genomes] |
rs62054438 | 1.00[ASN][1000 genomes] |
rs62054439 | 1.00[ASN][1000 genomes] |
rs62054440 | 1.00[ASN][1000 genomes] |
rs62054442 | 1.00[ASN][1000 genomes] |
rs62055660 | 1.00[ASN][1000 genomes] |
rs62055661 | 1.00[ASN][1000 genomes] |
rs62055662 | 1.00[ASN][1000 genomes] |
rs62055663 | 1.00[ASN][1000 genomes] |
rs62055664 | 1.00[ASN][1000 genomes] |
rs62055665 | 1.00[ASN][1000 genomes] |
rs62055689 | 1.00[ASN][1000 genomes] |
rs62055691 | 1.00[ASN][1000 genomes] |
rs62055692 | 1.00[ASN][1000 genomes] |
rs62055693 | 1.00[ASN][1000 genomes] |
rs62055696 | 1.00[ASN][1000 genomes] |
rs62055697 | 1.00[ASN][1000 genomes] |
rs62055698 | 1.00[ASN][1000 genomes] |
rs62055700 | 1.00[ASN][1000 genomes] |
rs62055701 | 1.00[ASN][1000 genomes] |
rs62055702 | 1.00[ASN][1000 genomes] |
rs62055704 | 1.00[ASN][1000 genomes] |
rs62055705 | 1.00[ASN][1000 genomes] |
rs62055707 | 1.00[ASN][1000 genomes] |
rs62055708 | 1.00[ASN][1000 genomes] |
rs62055709 | 1.00[ASN][1000 genomes] |
rs62055710 | 1.00[ASN][1000 genomes] |
rs62055712 | 1.00[ASN][1000 genomes] |
rs62055713 | 1.00[ASN][1000 genomes] |
rs62055714 | 1.00[ASN][1000 genomes] |
rs62055715 | 1.00[ASN][1000 genomes] |
rs62055716 | 1.00[ASN][1000 genomes] |
rs62055717 | 1.00[ASN][1000 genomes] |
rs62055751 | 1.00[ASN][1000 genomes] |
rs62055752 | 1.00[ASN][1000 genomes] |
rs62055753 | 1.00[ASN][1000 genomes] |
rs62055754 | 1.00[ASN][1000 genomes] |
rs62055868 | 1.00[ASN][1000 genomes] |
rs62055869 | 1.00[ASN][1000 genomes] |
rs62055871 | 1.00[ASN][1000 genomes] |
rs62055875 | 1.00[ASN][1000 genomes] |
rs62055876 | 1.00[ASN][1000 genomes] |
rs62055878 | 1.00[ASN][1000 genomes] |
rs62055879 | 1.00[ASN][1000 genomes] |
rs62055883 | 1.00[ASN][1000 genomes] |
rs62055884 | 1.00[ASN][1000 genomes] |
rs62055885 | 1.00[ASN][1000 genomes] |
rs62055886 | 1.00[ASN][1000 genomes] |
rs62055887 | 1.00[ASN][1000 genomes] |
rs62055888 | 1.00[ASN][1000 genomes] |
rs62055889 | 1.00[ASN][1000 genomes] |
rs62056874 | 1.00[ASN][1000 genomes] |
rs62056875 | 1.00[ASN][1000 genomes] |
rs62056876 | 1.00[ASN][1000 genomes] |
rs62056877 | 1.00[ASN][1000 genomes] |
rs62056878 | 1.00[ASN][1000 genomes] |
rs62056879 | 1.00[ASN][1000 genomes] |
rs62056880 | 1.00[ASN][1000 genomes] |
rs62056881 | 1.00[ASN][1000 genomes] |
rs62056905 | 1.00[ASN][1000 genomes] |
rs62056906 | 1.00[ASN][1000 genomes] |
rs62056908 | 1.00[ASN][1000 genomes] |
rs62056909 | 1.00[ASN][1000 genomes] |
rs62056910 | 1.00[ASN][1000 genomes] |
rs62056911 | 1.00[ASN][1000 genomes] |
rs62056912 | 1.00[ASN][1000 genomes] |
rs62056913 | 1.00[ASN][1000 genomes] |
rs62056915 | 1.00[ASN][1000 genomes] |
rs62056916 | 1.00[ASN][1000 genomes] |
rs62056917 | 1.00[ASN][1000 genomes] |
rs62056918 | 1.00[ASN][1000 genomes] |
rs62056919 | 1.00[ASN][1000 genomes] |
rs62056920 | 1.00[ASN][1000 genomes] |
rs62056921 | 1.00[ASN][1000 genomes] |
rs62056922 | 1.00[ASN][1000 genomes] |
rs62056925 | 1.00[ASN][1000 genomes] |
rs62056926 | 1.00[ASN][1000 genomes] |
rs62056927 | 1.00[ASN][1000 genomes] |
rs62056928 | 1.00[ASN][1000 genomes] |
rs62056929 | 1.00[ASN][1000 genomes] |
rs62056930 | 1.00[ASN][1000 genomes] |
rs62056931 | 1.00[ASN][1000 genomes] |
rs62056932 | 1.00[ASN][1000 genomes] |
rs62056933 | 1.00[ASN][1000 genomes] |
rs62056934 | 1.00[ASN][1000 genomes] |
rs62056935 | 1.00[ASN][1000 genomes] |
rs62056936 | 1.00[ASN][1000 genomes] |
rs62056937 | 1.00[ASN][1000 genomes] |
rs62056939 | 1.00[ASN][1000 genomes] |
rs62056940 | 1.00[ASN][1000 genomes] |
rs62056946 | 1.00[ASN][1000 genomes] |
rs62064364 | 1.00[ASN][1000 genomes] |
rs62064597 | 1.00[ASN][1000 genomes] |
rs62064598 | 1.00[ASN][1000 genomes] |
rs62064600 | 1.00[ASN][1000 genomes] |
rs62064603 | 1.00[ASN][1000 genomes] |
rs62064637 | 1.00[ASN][1000 genomes] |
rs62064641 | 1.00[ASN][1000 genomes] |
rs62064643 | 1.00[ASN][1000 genomes] |
rs62064645 | 1.00[ASN][1000 genomes] |
rs62064647 | 1.00[ASN][1000 genomes] |
rs62064649 | 1.00[ASN][1000 genomes] |
rs62064653 | 1.00[ASN][1000 genomes] |
rs62064654 | 1.00[ASN][1000 genomes] |
rs62064655 | 1.00[ASN][1000 genomes] |
rs62064657 | 1.00[ASN][1000 genomes] |
rs62065374 | 1.00[ASN][1000 genomes] |
rs62065376 | 1.00[ASN][1000 genomes] |
rs62065377 | 1.00[ASN][1000 genomes] |
rs62065378 | 1.00[ASN][1000 genomes] |
rs62065379 | 1.00[ASN][1000 genomes] |
rs62065380 | 1.00[ASN][1000 genomes] |
rs62065385 | 1.00[ASN][1000 genomes] |
rs62065389 | 1.00[ASN][1000 genomes] |
rs62065391 | 1.00[ASN][1000 genomes] |
rs62065392 | 1.00[ASN][1000 genomes] |
rs62065393 | 1.00[ASN][1000 genomes] |
rs62065399 | 1.00[ASN][1000 genomes] |
rs62065403 | 1.00[ASN][1000 genomes] |
rs62065404 | 1.00[ASN][1000 genomes] |
rs62065436 | 1.00[ASN][1000 genomes] |
rs62065437 | 1.00[ASN][1000 genomes] |
rs62065438 | 1.00[ASN][1000 genomes] |
rs62065441 | 1.00[ASN][1000 genomes] |
rs62065442 | 1.00[ASN][1000 genomes] |
rs62065444 | 1.00[ASN][1000 genomes] |
rs62065445 | 1.00[ASN][1000 genomes] |
rs62065447 | 1.00[ASN][1000 genomes] |
rs62065448 | 1.00[ASN][1000 genomes] |
rs62065449 | 1.00[ASN][1000 genomes] |
rs62065452 | 1.00[ASN][1000 genomes] |
rs62065453 | 1.00[ASN][1000 genomes] |
rs62065459 | 1.00[ASN][1000 genomes] |
rs62066128 | 1.00[ASN][1000 genomes] |
rs62066460 | 1.00[ASN][1000 genomes] |
rs71238846 | 1.00[ASN][1000 genomes] |
rs71373560 | 1.00[ASN][1000 genomes] |
rs71373572 | 1.00[ASN][1000 genomes] |
rs71375313 | 1.00[ASN][1000 genomes] |
rs7209501 | 1.00[ASN][1000 genomes] |
rs7220206 | 1.00[ASN][1000 genomes] |
rs7222389 | 1.00[ASN][1000 genomes] |
rs7222444 | 1.00[ASN][1000 genomes] |
rs7350923 | 1.00[ASN][1000 genomes] |
rs73984391 | 1.00[ASN][1000 genomes] |
rs7502718 | 1.00[ASN][1000 genomes] |
rs7502937 | 1.00[ASN][1000 genomes] |
rs9730 | 1.00[ASN][1000 genomes] |
rs9906974 | 1.00[ASN][1000 genomes] |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv431632 | chr17:43199763-43733983 | Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 210 gene(s) | inside rSNPs | diseases |
2 | nsv431633 | chr17:43199763-43772540 | Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 210 gene(s) | inside rSNPs | diseases |
3 | esv2754858 | chr17:43403005-43666906 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | nsv431637 | chr17:43403005-43716885 | Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
5 | esv2757659 | chr17:43457886-43733983 | Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
6 | esv2758691 | chr17:43457886-43816023 | Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
7 | esv2755280 | chr17:43459697-43666906 | Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
8 | nsv1065930 | chr17:43467291-44151468 | Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
9 | nsv431638 | chr17:43470156-43693538 | Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
10 | esv34307 | chr17:43470760-43666906 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
11 | esv2755466 | chr17:43470760-43666906 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
12 | esv2756448 | chr17:43470760-43666906 | Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
13 | nsv431640 | chr17:43470760-43666906 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
14 | esv2753768 | chr17:43470760-43734304 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
15 | esv2754725 | chr17:43470760-43741452 | Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
16 | esv35084 | chr17:43485791-43666906 | Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
17 | esv2754833 | chr17:43485791-43666906 | Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
18 | nsv431643 | chr17:43485791-43666906 | Enhancers Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
19 | nsv431642 | chr17:43485791-43716885 | Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
20 | nsv431645 | chr17:43516402-43666906 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
21 | esv2753034 | chr17:43516402-43693538 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
22 | nsv870307 | chr17:43518341-43675408 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
23 | esv35055 | chr17:43541656-43666906 | Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
24 | esv2755879 | chr17:43541656-43741452 | Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
25 | esv2752514 | chr17:43541834-43666906 | Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
26 | nsv431649 | chr17:43541834-43666906 | Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
27 | nsv431647 | chr17:43541834-43693538 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
28 | esv33076 | chr17:43570399-43675437 | ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
29 | nsv9563 | chr17:43572112-43706914 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
30 | esv18131 | chr17:43573474-43711700 | Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
31 | nsv1056136 | chr17:43574122-43693538 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
32 | esv2760446 | chr17:43574134-43675472 | Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
33 | nsv1059393 | chr17:43585744-43711024 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
34 | esv1833170 | chr17:43587171-43679202 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
35 | nsv869210 | chr17:43593476-44224221 | Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
36 | nsv2064 | chr17:43618013-43663452 | Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
37 | esv2758456 | chr17:43621949-43816023 | Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
38 | nsv427998 | chr17:43621949-43962285 | Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
39 | esv13385 | chr17:43631231-43662032 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
40 | esv1803623 | chr17:43633924-43702683 | Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
41 | esv1794804 | chr17:43639741-43704496 | Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
42 | nsv833458 | chr17:43645186-43785161 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
43 | esv1808071 | chr17:43648399-43663461 | Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
44 | esv1797118 | chr17:43648399-43707300 | Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
45 | esv1794464 | chr17:43648716-43706747 | Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
46 | esv3360677 | chr17:43649069-43662967 | ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
47 | esv3378395 | chr17:43649169-43663167 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
48 | esv3413132 | chr17:43649669-43663367 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
49 | esv1805515 | chr17:43650116-43665677 | Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
50 | esv1791978 | chr17:43650467-43702483 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs2693359 | MAPK8IP1 | trans | lymphoblastoid | RTeQTL |
rs2693359 | ARL17 | Cis_1M | lymphoblastoid | RTeQTL |
rs2693359 | LRRC37A3 | Cis_chr | lymphoblastoid | RTeQTL |
rs2693359 | LRRC37A4 | Cis_1M | lymphoblastoid | RTeQTL |
rs2693359 | LOC644246 | Cis_1M | lymphoblastoid | RTeQTL |
rs2693359 | ARHGAP27 | Cis_1M | lymphoblastoid | RTeQTL |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:43653400-43661800 | Weak transcription | Spleen | Spleen |
2 | chr17:43660200-43662000 | Flanking Active TSS | Primary neutrophils fromperipheralblood | blood |
3 | chr17:43660200-43662000 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
4 | chr17:43660200-43662000 | Flanking Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
5 | chr17:43660200-43662000 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
6 | chr17:43660200-43662200 | Flanking Active TSS | Primary hematopoietic stem cells short term culture | blood |
7 | chr17:43660400-43661800 | Flanking Active TSS | Muscle Satellite Cultured Cells | -- |
8 | chr17:43660400-43661800 | Flanking Active TSS | Duodenum Smooth Muscle | Duodenum |
9 | chr17:43660400-43662000 | Flanking Active TSS | Rectal Mucosa Donor 29 | rectum |
10 | chr17:43660400-43662000 | Flanking Active TSS | NHEK | skin |
11 | chr17:43660400-43662200 | Flanking Active TSS | Primary B cells from cord blood | blood |
12 | chr17:43660400-43662200 | Flanking Active TSS | Primary hematopoietic stem cells | blood |
13 | chr17:43660400-43663400 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
14 | chr17:43660400-43664000 | Active TSS | HUES6 Cell Line | embryonic stem cell |
15 | chr17:43660400-43664200 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
16 | chr17:43660600-43663000 | Active TSS | K562 | blood |
17 | chr17:43660600-43663200 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
18 | chr17:43660600-43663200 | Active TSS | iPS-15b Cell Line | embryonic stem cell |
19 | chr17:43660600-43663800 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
20 | chr17:43660600-43663800 | Active TSS | Right Atrium | heart |
21 | chr17:43660600-43664000 | Active TSS | H1 Cell Line | embryonic stem cell |
22 | chr17:43660600-43664000 | Active TSS | GM12878-XiMat | blood |
23 | chr17:43660600-43664400 | Active TSS | iPS-18 Cell Line | embryonic stem cell |
24 | chr17:43660800-43661800 | Flanking Active TSS | Primary T cells from cord blood | blood |
25 | chr17:43660800-43661800 | Bivalent/Poised TSS | Psoas Muscle | Psoas |
26 | chr17:43660800-43663200 | Active TSS | Aorta | Aorta |
27 | chr17:43660800-43663400 | Active TSS | H9 Cell Line | embryonic stem cell |
28 | chr17:43660800-43663400 | Active TSS | Fetal Intestine Large | intestine |
29 | chr17:43660800-43663600 | Active TSS | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
30 | chr17:43660800-43663800 | Active TSS | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
31 | chr17:43660800-43663800 | Active TSS | IMR90 fetal lung fibroblasts Cell Line | lung |
32 | chr17:43660800-43663800 | Active TSS | ES-UCSF4 Cell Line | embryonic stem cell |
33 | chr17:43660800-43663800 | Active TSS | Fetal Brain Female | brain |
34 | chr17:43660800-43664000 | Active TSS | H9 Derived Neuron Cultured Cells | ES cell derived |
35 | chr17:43660800-43664000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
36 | chr17:43660800-43664400 | Active TSS | HUES48 Cell Line | embryonic stem cell |
37 | chr17:43661000-43661800 | Active TSS | iPS DF 19.11 Cell Line | embryonic stem cell |
38 | chr17:43661000-43661800 | Flanking Active TSS | Primary B cells from peripheral blood | blood |
39 | chr17:43661000-43661800 | Flanking Active TSS | Primary T helper memory cells from peripheral blood 2 | blood |
40 | chr17:43661000-43661800 | Flanking Active TSS | Primary T helper naive cells fromperipheralblood | blood |
41 | chr17:43661000-43661800 | Flanking Active TSS | Primary T killer memory cells from peripheral blood | blood |
42 | chr17:43661000-43661800 | Active TSS | Foreskin Melanocyte Primary Cells skin01 | Skin |
43 | chr17:43661000-43661800 | Active TSS | Liver | Liver |
44 | chr17:43661000-43661800 | Flanking Active TSS | Brain Anterior Caudate | brain |
45 | chr17:43661000-43661800 | Flanking Active TSS | Fetal Adrenal Gland | Adrenal Gland |
46 | chr17:43661000-43661800 | Flanking Active TSS | Fetal Heart | heart |
47 | chr17:43661000-43661800 | Flanking Active TSS | Hela-S3 | cervix |
48 | chr17:43661000-43661800 | Flanking Active TSS | NH-A | brain |
49 | chr17:43661000-43662000 | Flanking Active TSS | Primary monocytes fromperipheralblood | blood |
50 | chr17:43661000-43662000 | Flanking Active TSS | Primary T helper memory cells from peripheral blood 1 | blood |