Variant report

Variant	rs2694155
Chromosome Location	chr7:101904174-101904175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2021738	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021739	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529116	0.91[ASN][1000 genomes]
rs2529117	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2694151	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694156	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
2	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:101866800-101907600	Weak transcription	NH-A	brain
4	chr7:101886200-101904200	Weak transcription	Brain Substantia Nigra	brain
5	chr7:101886200-101906200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:101888800-101907800	Weak transcription	Fetal Lung	lung
7	chr7:101892800-101928000	Weak transcription	Esophagus	oesophagus
8	chr7:101892800-101928400	Weak transcription	Right Ventricle	heart
9	chr7:101893800-101913400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:101894000-101908000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:101894000-101911800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:101894000-101916800	Weak transcription	Lung	lung
13	chr7:101897400-101907600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:101897400-101915400	Weak transcription	Pancreas	Pancrea
15	chr7:101897600-101928000	Weak transcription	Primary T cells from cord blood	blood
16	chr7:101897800-101907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:101898000-101904200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:101898000-101907600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:101898000-101907600	Weak transcription	Spleen	Spleen
20	chr7:101898000-101928200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:101898200-101904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:101898200-101907600	Weak transcription	Gastric	stomach
23	chr7:101898200-101922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:101899600-101904800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:101899600-101909600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr7:101899800-101904800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:101899800-101922800	Weak transcription	Right Atrium	heart
28	chr7:101900200-101915600	Weak transcription	Fetal Intestine Small	intestine
29	chr7:101900400-101907600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:101902000-101907600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:101902000-101917000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:101902200-101904200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr7:101902200-101905000	Enhancers	HepG2	liver
34	chr7:101902200-101911800	Weak transcription	Thymus	Thymus
35	chr7:101902400-101904200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:101902400-101907600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:101902600-101904600	Weak transcription	Fetal Stomach	stomach
38	chr7:101904000-101904200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:101904000-101904400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:101904000-101904400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr7:101904000-101904400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:101904000-101904400	Enhancers	Fetal Brain Male	brain
43	chr7:101904000-101904400	Enhancers	Fetal Brain Female	brain
44	chr7:101904000-101904400	Enhancers	Left Ventricle	heart
45	chr7:101904000-101904600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr7:101904000-101904600	Enhancers	Brain Cingulate Gyrus	brain
47	chr7:101904000-101904600	Enhancers	Colon Smooth Muscle	Colon
48	chr7:101904000-101905000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:101904000-101905000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:101904000-101905000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links