Variant report
| Variant | rs269702 |
|---|---|
| Chromosome Location | chr5:92725028-92725029 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10064251 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10072317 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10463227 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11135387 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1471289 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs187931 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2343708 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs269696 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs269700 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs269701 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs269703 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs269704 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs269705 | 0.90[ASN][1000 genomes] |
| rs269706 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs269707 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4869111 | 0.80[EUR][1000 genomes] |
| rs4869195 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6420123 | 0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs898597 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9314085 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs984645 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830400 | chr5:92515026-92738896 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv830402 | chr5:92703901-92847345 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:92719000-92730400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
