Variant report

Variant	rs269705
Chromosome Location	chr5:92731616-92731617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064251	0.89[ASN][1000 genomes]
rs10072317	0.89[ASN][1000 genomes]
rs187931	0.92[ASN][1000 genomes]
rs2613198	0.82[AFR][1000 genomes]
rs269696	0.90[ASN][1000 genomes]
rs269700	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs269701	0.91[ASN][1000 genomes]
rs269702	0.90[ASN][1000 genomes]
rs269703	0.92[ASN][1000 genomes]
rs269704	0.87[ASN][1000 genomes]
rs269706	0.95[ASN][1000 genomes]
rs269707	0.95[ASN][1000 genomes]
rs6420123	0.92[ASN][1000 genomes]
rs898597	0.90[ASN][1000 genomes]
rs9314085	0.86[ASN][1000 genomes]
rs984645	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs269705	FAM172A	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92730800-92731800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92730800-92732400	Enhancers	Fetal Brain Male	brain
3	chr5:92730800-92732400	Enhancers	Fetal Lung	lung
4	chr5:92731000-92732000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:92731000-92732200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:92731600-92732400	Enhancers	Fetal Kidney	kidney
7	chr5:92731600-92732600	Enhancers	Fetal Stomach	stomach
8	chr5:92731600-92733000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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