Variant report

Variant	rs2700061
Chromosome Location	chr12:67933299-67933300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12301392	1.00[AMR][1000 genomes]
rs12301453	1.00[AMR][1000 genomes]
rs12312713	1.00[AMR][1000 genomes]
rs12315232	1.00[AMR][1000 genomes]
rs12319094	1.00[AMR][1000 genomes]
rs17104136	1.00[AMR][1000 genomes]
rs1731770	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1882032	0.86[AFR][1000 genomes]
rs2700056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2700063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35314758	1.00[AMR][1000 genomes]
rs6581762	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298233	1.00[AMR][1000 genomes]
rs7956219	1.00[AMR][1000 genomes]
rs7970098	1.00[AMR][1000 genomes]
rs9652023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67925200-67934800	Weak transcription	Gastric	stomach
2	chr12:67929000-67933600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:67929000-67933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:67929000-67933800	Weak transcription	NHEK	skin
5	chr12:67929200-67934600	Weak transcription	NH-A	brain
6	chr12:67929600-67933800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:67929600-67933800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:67929600-67933800	Weak transcription	HMEC	breast
9	chr12:67929600-67934600	Weak transcription	HSMM	muscle
10	chr12:67930000-67935000	Weak transcription	Stomach Mucosa	stomach
11	chr12:67930400-67934800	Weak transcription	Fetal Intestine Small	intestine
12	chr12:67930400-67935600	Weak transcription	Fetal Intestine Large	intestine
13	chr12:67933000-67933400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:67933000-67933400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:67933000-67933800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:67933200-67933400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:67933200-67934000	Enhancers	Lung	lung
18	chr12:67933200-67935600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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