Variant report

Variant	rs2700063
Chromosome Location	chr12:67931247-67931248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:67931176..67934535-chr12:68041710..68043984,4	MCF-7	breast:
2	chr12:67925081..67927690-chr12:67930273..67933177,2	MCF-7	breast:
3	chr12:67921567..67923313-chr12:67929508..67932391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127334	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12301392	1.00[AMR][1000 genomes]
rs12301453	1.00[AMR][1000 genomes]
rs12312713	1.00[AMR][1000 genomes]
rs12315232	1.00[AMR][1000 genomes]
rs12319094	1.00[AMR][1000 genomes]
rs17104136	1.00[AMR][1000 genomes]
rs1731770	1.00[AMR][1000 genomes]
rs1882032	1.00[AFR][1000 genomes]
rs2700056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2700061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2700148	0.86[AFR][1000 genomes]
rs35314758	1.00[AMR][1000 genomes]
rs6581762	1.00[AMR][1000 genomes]
rs7298233	1.00[AMR][1000 genomes]
rs7956219	1.00[AMR][1000 genomes]
rs7970098	1.00[AMR][1000 genomes]
rs9652023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67919200-67933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:67925200-67934800	Weak transcription	Gastric	stomach
3	chr12:67929000-67933000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:67929000-67933600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:67929000-67933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:67929000-67933800	Weak transcription	NHEK	skin
7	chr12:67929200-67933000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:67929200-67933200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:67929200-67934600	Weak transcription	NH-A	brain
10	chr12:67929600-67932800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:67929600-67933800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr12:67929600-67933800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:67929600-67933800	Weak transcription	HMEC	breast
14	chr12:67929600-67934600	Weak transcription	HSMM	muscle
15	chr12:67930000-67935000	Weak transcription	Stomach Mucosa	stomach
16	chr12:67930400-67934800	Weak transcription	Fetal Intestine Small	intestine
17	chr12:67930400-67935600	Weak transcription	Fetal Intestine Large	intestine
18	chr12:67930600-67931400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr12:67931200-67931400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:67931200-67931400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:67931200-67931400	Enhancers	Esophagus	oesophagus

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