Variant report

Variant	rs2700148
Chromosome Location	chr12:67979744-67979745
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1882032	0.86[AFR][1000 genomes]
rs2700056	0.86[AFR][1000 genomes]
rs2700063	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67974600-67983600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:67974800-67983000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:67974800-67983400	Weak transcription	Thymus	Thymus
4	chr12:67975600-67982800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:67977400-67983400	Weak transcription	Fetal Thymus	thymus
6	chr12:67979000-67983400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:67979200-67979800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:67979200-67983200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:67979200-67983200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:67979400-67983000	Weak transcription	Primary T cells from cord blood	blood
11	chr12:67979400-67983200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:67979400-67983200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr12:67979400-67983400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links