Variant report

Variant	rs2700478
Chromosome Location	chr12:51028544-51028545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51028358..51031914-chr12:51032564..51035551,3	K562	blood:
2	chr12:50925067..50926817-chr12:51027774..51030110,2	MCF-7	breast:
3	chr12:51022477..51026896-chr12:51028497..51032139,4	MCF-7	breast:
4	chr12:50897525..50900115-chr12:51025935..51031272,7	MCF-7	breast:
5	chr12:51019148..51021821-chr12:51028441..51030840,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10431535	0.85[EUR][1000 genomes]
rs10444547	0.87[EUR][1000 genomes]
rs10459233	0.81[EUR][1000 genomes]
rs10506294	0.82[EUR][1000 genomes]
rs10783375	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783381	0.86[EUR][1000 genomes]
rs10783382	0.83[EUR][1000 genomes]
rs10876070	0.86[EUR][1000 genomes]
rs10876071	0.86[EUR][1000 genomes]
rs10876072	0.86[EUR][1000 genomes]
rs10876073	0.87[EUR][1000 genomes]
rs10876074	0.95[ASN][1000 genomes]
rs10876075	0.86[EUR][1000 genomes]
rs10876076	0.86[EUR][1000 genomes]
rs11169505	0.85[EUR][1000 genomes]
rs11169506	0.97[ASN][1000 genomes]
rs11169507	0.86[EUR][1000 genomes]
rs11169515	0.83[EUR][1000 genomes]
rs11169524	0.90[ASN][1000 genomes]
rs12230242	0.85[EUR][1000 genomes]
rs12231309	0.85[EUR][1000 genomes]
rs12231317	0.86[EUR][1000 genomes]
rs12580051	0.86[EUR][1000 genomes]
rs12809086	0.82[EUR][1000 genomes]
rs12818741	0.97[ASN][1000 genomes]
rs13378012	0.94[ASN][1000 genomes]
rs2090851	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2090852	0.90[ASN][1000 genomes]
rs2139930	0.90[ASN][1000 genomes]
rs2243571	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2264734	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280503	0.84[ASN][1000 genomes]
rs2684908	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34553264	0.90[ASN][1000 genomes]
rs34867510	0.81[EUR][1000 genomes]
rs3742062	0.86[ASN][1000 genomes]
rs3935138	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4238106	0.86[EUR][1000 genomes]
rs4238108	0.82[EUR][1000 genomes]
rs4388959	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4617661	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4768847	0.85[EUR][1000 genomes]
rs4768858	0.86[EUR][1000 genomes]
rs4768899	0.86[EUR][1000 genomes]
rs61926278	0.87[ASN][1000 genomes]
rs6580756	0.86[EUR][1000 genomes]
rs6580761	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67092086	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7134976	0.86[EUR][1000 genomes]
rs7137845	0.90[ASN][1000 genomes]
rs7305375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7307419	0.86[EUR][1000 genomes]
rs7316864	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7397999	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs876078	0.86[EUR][1000 genomes]
rs876079	0.86[EUR][1000 genomes]
rs876080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs952318	0.87[EUR][1000 genomes]
rs9788159	0.86[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014400-51030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
5	chr12:51016000-51030400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:51016000-51030600	Weak transcription	Psoas Muscle	Psoas
7	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
8	chr12:51016200-51030400	Weak transcription	Brain Germinal Matrix	brain
9	chr12:51016200-51035400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:51016600-51039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:51019600-51030000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr12:51019600-51031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr12:51019600-51031200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:51019800-51030400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:51019800-51031400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr12:51020000-51031400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr12:51020200-51030400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:51021000-51030600	Weak transcription	HUVEC	blood vessel
21	chr12:51021000-51039800	Weak transcription	NHLF	lung
22	chr12:51021600-51029200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:51021600-51031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr12:51021600-51031400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:51021600-51041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:51021800-51030600	Weak transcription	HMEC	breast
27	chr12:51021800-51031000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:51021800-51034600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:51021800-51036000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr12:51021800-51041000	Weak transcription	Fetal Kidney	kidney
31	chr12:51021800-51041400	Weak transcription	Right Ventricle	heart
32	chr12:51022000-51033600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:51022000-51036200	Weak transcription	Pancreas	Pancrea
34	chr12:51022000-51037200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr12:51022200-51035000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr12:51022400-51030400	Weak transcription	Spleen	Spleen
39	chr12:51022400-51034000	Weak transcription	K562	blood
40	chr12:51022400-51035400	Weak transcription	Lung	lung
41	chr12:51022400-51055200	Weak transcription	Ovary	ovary
42	chr12:51022600-51035400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr12:51023000-51034400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr12:51023200-51029000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr12:51023200-51035400	Weak transcription	Hela-S3	cervix
48	chr12:51023400-51034400	Weak transcription	Placenta	Placenta
49	chr12:51023600-51028600	Weak transcription	Primary T cells from cord blood	blood
50	chr12:51023600-51031000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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