Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12188212	0.81[AMR][1000 genomes]
rs13174024	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13183889	0.84[CEU][hapmap]
rs152979	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs152984	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs152985	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs152989	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs154206	0.89[ASN][1000 genomes]
rs183628	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2194135	0.81[AMR][1000 genomes]
rs251532	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2591447	0.84[CEU][hapmap]
rs27021	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs27022	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27391	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs27575	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs27861	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28078	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29768	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs29771	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29774	0.88[ASN][1000 genomes]
rs39579	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs466366	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs468562	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs469491	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs27024	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97946400-97967200	Weak transcription	HSMMtube	muscle
2	chr5:97956600-97964400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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