Variant report

Variant	rs2704408
Chromosome Location	chr4:48213512-48213513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:48204459..48206911-chr4:48210318..48213685,3	K562	blood:
2	chr4:48212946..48214780-chr4:48271191..48273507,2	K562	blood:
3	chr4:48211265..48214247-chr4:48216270..48217913,2	K562	blood:

Variant related genes	Relation type
ENSG00000135605	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1355219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355220	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396877	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17655303	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1912163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912164	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055803	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664026	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2664036	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664039	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2704414	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3062075	0.83[ASN][1000 genomes]
rs4695361	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55885170	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56156164	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56363516	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381082	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62309333	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62309349	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834565	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48190400-48222000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:48204400-48225600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:48207400-48227800	Weak transcription	Esophagus	oesophagus
4	chr4:48207800-48213600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:48212200-48213800	Flanking Active TSS	GM12878-XiMat	blood
6	chr4:48212200-48214200	Enhancers	Primary B cells from cord blood	blood
7	chr4:48212400-48215000	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:48212600-48213600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:48212600-48213800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:48212600-48213800	Weak transcription	Thymus	Thymus
11	chr4:48212600-48214000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr4:48213000-48214800	Enhancers	Liver	Liver
13	chr4:48213200-48213600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:48213200-48213600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:48213200-48214200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr4:48213400-48213600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr4:48213400-48213800	Active TSS	K562	blood

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