Variant report

Variant	rs2705350
Chromosome Location	chr15:34550118-34550119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34542779..34546131-chr15:34549180..34553108,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10152189	1.00[EUR][1000 genomes]
rs10152222	1.00[EUR][1000 genomes]
rs10152407	1.00[EUR][1000 genomes]
rs10162625	1.00[EUR][1000 genomes]
rs10467959	1.00[EUR][1000 genomes]
rs10468070	1.00[EUR][1000 genomes]
rs12324469	1.00[EUR][1000 genomes]
rs13379654	1.00[EUR][1000 genomes]
rs13380356	1.00[EUR][1000 genomes]
rs13380366	1.00[EUR][1000 genomes]
rs16958911	0.90[EUR][1000 genomes]
rs2615359	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2705346	1.00[YRI][hapmap]
rs2705347	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2705349	1.00[EUR][1000 genomes]
rs28442188	1.00[EUR][1000 genomes]
rs28543997	1.00[EUR][1000 genomes]
rs28608058	1.00[EUR][1000 genomes]
rs28857572	1.00[EUR][1000 genomes]
rs347814	0.92[AMR][1000 genomes]
rs347815	1.00[EUR][1000 genomes]
rs56964418	1.00[EUR][1000 genomes]
rs57044113	1.00[EUR][1000 genomes]
rs58198195	1.00[EUR][1000 genomes]
rs60708162	1.00[EUR][1000 genomes]
rs61659679	1.00[EUR][1000 genomes]
rs6495649	1.00[EUR][1000 genomes]
rs6495650	1.00[EUR][1000 genomes]
rs6495652	1.00[EUR][1000 genomes]
rs6495653	1.00[EUR][1000 genomes]
rs6495654	1.00[EUR][1000 genomes]
rs6495655	1.00[EUR][1000 genomes]
rs6495656	1.00[EUR][1000 genomes]
rs6495657	0.90[EUR][1000 genomes]
rs6495658	1.00[EUR][1000 genomes]
rs6495659	1.00[EUR][1000 genomes]
rs7165738	1.00[EUR][1000 genomes]
rs7165973	1.00[EUR][1000 genomes]
rs7166559	1.00[EUR][1000 genomes]
rs7167379	1.00[EUR][1000 genomes]
rs7168168	1.00[EUR][1000 genomes]
rs7168707	1.00[EUR][1000 genomes]
rs7169802	1.00[EUR][1000 genomes]
rs7170829	1.00[EUR][1000 genomes]
rs7175327	1.00[EUR][1000 genomes]
rs7175736	1.00[EUR][1000 genomes]
rs7176138	1.00[EUR][1000 genomes]
rs8023999	1.00[EUR][1000 genomes]
rs8024443	1.00[EUR][1000 genomes]
rs8025075	1.00[EUR][1000 genomes]
rs8026499	1.00[EUR][1000 genomes]
rs8029788	1.00[EUR][1000 genomes]
rs8035044	1.00[EUR][1000 genomes]
rs8039233	1.00[EUR][1000 genomes]
rs8039356	1.00[EUR][1000 genomes]
rs8042422	1.00[EUR][1000 genomes]
rs8042605	1.00[EUR][1000 genomes]
rs9806778	1.00[EUR][1000 genomes]
rs9989297	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
2	chr15:34519000-34552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:34519200-34552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:34519200-34553600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:34519400-34552200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr15:34519400-34552200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:34519600-34553600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:34524200-34552400	Strong transcription	Primary B cells from cord blood	blood
10	chr15:34524800-34553600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:34528600-34554600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:34529000-34554800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:34529200-34550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:34529200-34552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:34533000-34555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:34533000-34556600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:34533000-34564000	Weak transcription	NHLF	lung
18	chr15:34533200-34551200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:34533200-34557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:34533200-34562800	Weak transcription	Pancreas	Pancrea
21	chr15:34535200-34552200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:34535400-34551200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr15:34535600-34551200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:34539400-34552200	Weak transcription	HMEC	breast
25	chr15:34540000-34551200	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:34540200-34552200	Strong transcription	Adipose Nuclei	Adipose
27	chr15:34540800-34550800	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:34540800-34551200	Strong transcription	Liver	Liver
29	chr15:34541000-34551400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:34541400-34552200	Strong transcription	GM12878-XiMat	blood
31	chr15:34543000-34551800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:34543000-34568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:34543200-34558800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr15:34544600-34550600	Weak transcription	Fetal Brain Male	brain
35	chr15:34544600-34552000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:34544600-34554400	Weak transcription	NHDF-Ad	bronchial
37	chr15:34544600-34559000	Weak transcription	A549	lung
38	chr15:34545000-34551600	Weak transcription	HSMM	muscle
39	chr15:34545200-34551200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:34545200-34552200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:34545200-34553600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:34545400-34552000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:34545400-34555400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:34545800-34553600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:34546400-34551600	Weak transcription	K562	blood
46	chr15:34546600-34555800	Weak transcription	Hela-S3	cervix
47	chr15:34546600-34556400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:34546800-34550400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:34546800-34550400	Weak transcription	Fetal Thymus	thymus
50	chr15:34546800-34550400	Weak transcription	Lung	lung

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