Variant report

Variant	rs2707585
Chromosome Location	chr7:147649772-147649773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10263964	0.96[CEU][hapmap];0.95[GIH][hapmap]
rs11771941	0.81[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs1541412	0.81[CHB][hapmap]
rs1574301	0.83[ASN][1000 genomes]
rs17170769	0.96[CEU][hapmap];0.95[GIH][hapmap]
rs17432092	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs17432209	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1922889	0.93[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs1997530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2141954	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2178768	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2178771	0.93[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs2189883	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2204924	0.96[CEU][hapmap];0.95[GIH][hapmap]
rs2204926	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs2214682	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs2246970	0.96[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap]
rs2707553	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2707575	0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2707576	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2707580	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2707581	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2708248	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2708261	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2708278	0.96[CEU][hapmap]
rs2708284	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs2710075	1.00[JPT][hapmap]
rs2710082	0.93[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap]
rs2710085	0.81[YRI][hapmap]
rs2859687	0.87[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs4726903	0.81[CHB][hapmap]
rs66553749	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6946207	0.84[JPT][hapmap]
rs6953539	0.81[CHB][hapmap]
rs8180798	0.96[CEU][hapmap]
rs8180832	0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2707585	CNTNAP2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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