Variant report

Variant	rs2707977
Chromosome Location	chr3:142647160-142647161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:142646642..142649526-chr3:142698075..142700491,2	K562	blood:
2	chr3:142605802..142607815-chr3:142647125..142649586,2	K562	blood:
3	chr3:142646363..142649526-chr3:142696686..142700491,3	K562	blood:
4	chr3:142646198..142649635-chr3:142718631..142722027,3	K562	blood:
5	chr3:142644210..142646377-chr3:142646529..142649534,4	K562	blood:
6	chr3:142646198..142649043-chr3:142718631..142721603,3	K562	blood:
7	chr3:142637758..142639522-chr3:142646455..142648130,2	MCF-7	breast:
8	chr3:142645933..142648284-chr3:142709421..142711755,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000268129	Chromatin interaction
ENSG00000163714	Chromatin interaction
ENSG00000163710	Chromatin interaction
ENSG00000243818	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1036691	0.83[EUR][1000 genomes]
rs1457684	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1457685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1463559	0.83[EUR][1000 genomes]
rs2581619	0.82[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs2581620	0.82[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs2581626	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2581629	0.83[EUR][1000 genomes]
rs2581635	0.82[EUR][1000 genomes]
rs2581636	0.82[CEU][hapmap]
rs2581637	0.82[CEU][hapmap]
rs2608070	0.82[CEU][hapmap]
rs2608075	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608078	0.83[EUR][1000 genomes]
rs2608079	0.83[EUR][1000 genomes]
rs2619147	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2707973	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2707975	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2707983	0.82[CEU][hapmap]
rs2707991	0.83[EUR][1000 genomes]
rs2707996	0.83[EUR][1000 genomes]
rs2707997	0.99[EUR][1000 genomes]
rs4683435	0.83[EUR][1000 genomes]
rs6778732	0.81[EUR][1000 genomes]
rs893885	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9824548	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs984593	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs984594	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142643600-142647200	Enhancers	HepG2	liver
2	chr3:142645400-142648200	Flanking Active TSS	Liver	Liver
3	chr3:142646600-142647800	Weak transcription	K562	blood
4	chr3:142647000-142647400	Enhancers	Rectal Mucosa Donor 31	rectum

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