Variant report

Variant	rs2708275
Chromosome Location	chr7:147641150-147641151
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10952718	0.85[YRI][hapmap]
rs11762995	1.00[JPT][hapmap]
rs11763976	1.00[JPT][hapmap]
rs11764418	1.00[JPT][hapmap]
rs11766463	1.00[JPT][hapmap]
rs11767963	1.00[JPT][hapmap]
rs11768090	1.00[ASN][1000 genomes]
rs11771401	1.00[JPT][hapmap]
rs11771457	1.00[JPT][hapmap]
rs11773676	1.00[JPT][hapmap]
rs1882687	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922885	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1922886	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1922887	1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373288	1.00[ASN][1000 genomes]
rs2707555	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2707577	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707578	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710085	1.00[JPT][hapmap]
rs2710086	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710087	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2710089	1.00[JPT][hapmap]
rs73464281	1.00[ASN][1000 genomes]
rs73743659	1.00[ASN][1000 genomes]
rs73743660	1.00[ASN][1000 genomes]
rs7779536	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7780285	1.00[JPT][hapmap]
rs7793537	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9640247	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147639400-147641400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147639400-147641400	Weak transcription	Fetal Brain Female	brain
3	chr7:147641000-147642000	Enhancers	Brain Germinal Matrix	brain

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