Variant report

Variant	rs2708351
Chromosome Location	chr12:11284262-11284263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs1047710	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1047711	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1047713	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10732561	0.80[ASN][1000 genomes]
rs10734843	0.80[ASN][1000 genomes]
rs10772398	0.80[ASN][1000 genomes]
rs1376249	0.80[ASN][1000 genomes]
rs1427754	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1463237	0.80[ASN][1000 genomes]
rs1650016	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650019	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650021	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650022	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650023	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1650024	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1650025	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650026	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650027	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650028	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650032	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650033	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650034	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1650035	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669406	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669407	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669409	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669413	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1669415	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669416	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669417	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669419	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1669420	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669421	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669424	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669425	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669426	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669430	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669431	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669432	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669433	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669434	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1669435	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1669436	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1817043	0.80[ASN][1000 genomes]
rs1823663	0.80[AFR][1000 genomes]
rs1823664	0.80[AFR][1000 genomes]
rs1839569	0.80[ASN][1000 genomes]
rs187328	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2019629	0.80[AFR][1000 genomes]
rs2019633	0.80[AFR][1000 genomes]
rs2218818	0.80[AFR][1000 genomes]
rs2255418	0.80[ASN][1000 genomes]
rs2257110	0.80[ASN][1000 genomes]
rs2597918	0.80[AFR][1000 genomes]
rs2597920	0.80[AFR][1000 genomes]
rs2597921	0.80[AFR][1000 genomes]
rs2597923	0.80[AFR][1000 genomes]
rs2597929	0.80[AFR][1000 genomes]
rs2597930	0.80[AFR][1000 genomes]
rs2597953	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2597974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2597975	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2597984	0.80[ASN][1000 genomes]
rs2597988	0.80[ASN][1000 genomes]
rs2597990	0.80[ASN][1000 genomes]
rs2599396	0.80[AFR][1000 genomes]
rs2599397	0.80[AFR][1000 genomes]
rs2599398	0.80[AFR][1000 genomes]
rs2599399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2599400	0.82[AFR][1000 genomes]
rs2599415	0.80[ASN][1000 genomes]
rs2600337	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2600340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2600347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2600350	0.80[AFR][1000 genomes]
rs2600351	0.80[AFR][1000 genomes]
rs2600352	0.80[AFR][1000 genomes]
rs2600354	0.80[AFR][1000 genomes]
rs2600357	0.80[AFR][1000 genomes]
rs2600359	0.80[AFR][1000 genomes]
rs2600361	0.80[AFR][1000 genomes]
rs2600364	0.80[AFR][1000 genomes]
rs2600373	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2708323	0.80[ASN][1000 genomes]
rs2708334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708336	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708347	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708350	0.80[AFR][1000 genomes]
rs2708368	0.80[AFR][1000 genomes]
rs2708369	0.80[AFR][1000 genomes]
rs2708370	0.80[AFR][1000 genomes]
rs2900127	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2900577	0.80[ASN][1000 genomes]
rs2923860	0.80[AFR][1000 genomes]
rs319266	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs319269	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs319270	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs319276	0.80[ASN][1000 genomes]
rs319277	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34082341	0.80[AFR][1000 genomes]
rs34288418	0.80[AFR][1000 genomes]
rs34327967	0.80[AFR][1000 genomes]
rs34444884	0.80[AFR][1000 genomes]
rs34536990	0.80[AFR][1000 genomes]
rs34548551	0.80[AFR][1000 genomes]
rs34692077	0.98[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34769150	0.80[AFR][1000 genomes]
rs34843817	0.80[AFR][1000 genomes]
rs34927715	0.80[AFR][1000 genomes]
rs35017789	0.80[AFR][1000 genomes]
rs35124606	0.80[AFR][1000 genomes]
rs35318883	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35340812	0.80[AFR][1000 genomes]
rs35672518	0.86[ASN][1000 genomes]
rs35762060	0.83[ASN][1000 genomes]
rs35856529	0.80[AFR][1000 genomes]
rs4388985	0.80[ASN][1000 genomes]
rs4763632	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4763636	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4763637	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61928564	0.80[AFR][1000 genomes]
rs61928565	0.80[AFR][1000 genomes]
rs61928566	0.80[AFR][1000 genomes]
rs61928567	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928569	0.80[AFR][1000 genomes]
rs61928597	0.80[AFR][1000 genomes]
rs61928602	0.80[AFR][1000 genomes]
rs61928603	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61928604	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928606	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928608	0.85[AFR][1000 genomes]
rs61928609	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928614	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928615	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61928650	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61931269	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61931280	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6488347	0.80[AFR][1000 genomes]
rs6488348	0.80[AFR][1000 genomes]
rs6488349	0.80[AFR][1000 genomes]
rs6488350	0.80[AFR][1000 genomes]
rs6488351	0.80[AFR][1000 genomes]
rs6488353	0.88[AFR][1000 genomes]
rs6488355	0.80[AFR][1000 genomes]
rs6488356	0.80[AFR][1000 genomes]
rs68045377	0.93[EUR][1000 genomes]
rs68071847	0.95[ASN][1000 genomes]
rs7296270	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7298544	0.80[AFR][1000 genomes]
rs7298947	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302010	0.80[AFR][1000 genomes]
rs7304814	0.86[ASN][1000 genomes]
rs73050808	0.85[EUR][1000 genomes]
rs73051387	0.93[EUR][1000 genomes]
rs73053413	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7306087	0.80[ASN][1000 genomes]
rs73066828	0.85[EUR][1000 genomes]
rs73066852	0.85[EUR][1000 genomes]
rs7310047	0.80[AFR][1000 genomes]
rs7312327	0.81[AFR][1000 genomes]
rs7315843	0.80[ASN][1000 genomes]
rs7486717	0.80[AFR][1000 genomes]
rs7487324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7959320	0.80[AFR][1000 genomes]
rs7962445	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7973298	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7973730	0.80[AFR][1000 genomes]
rs7976211	0.80[AFR][1000 genomes]
rs8181	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs977473	0.80[AFR][1000 genomes]
rs977474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv1038277	chr12:11060978-11504091	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv1804289	chr12:11166879-11294110	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv8917	chr12:11168232-11293747	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv1835477	chr12:11174302-11298269	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv898783	chr12:11185236-11338781	ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv898784	chr12:11188140-11341521	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	esv3503785	chr12:11190186-11291382	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3503796	chr12:11190186-11291382	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1050050	chr12:11192046-11436359	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
13	nsv1053783	chr12:11203509-11495584	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
14	esv3389516	chr12:11207203-11290088	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	esv3350574	chr12:11212837-11284853	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv1807067	chr12:11214215-11568895	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
17	esv8675	chr12:11218264-11290113	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1042134	chr12:11220712-11328131	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
19	nsv1043344	chr12:11220827-11308162	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	esv3350046	chr12:11256985-11292181	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv983285	chr12:11279606-11293601	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2708351	TAS2R20	cis	lung	GTEx
rs2708351	TAS2R14	cis	Artery Tibial	GTEx
rs2708351	TAS2R15	cis	Thyroid	GTEx
rs2708351	TAS2R15	cis	Muscle Skeletal	GTEx
rs2708351	TAS2R14	cis	lung	GTEx
rs2708351	TAS2R14	cis	Thyroid	GTEx
rs2708351	TAS2R20	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11245200-11286000	Weak transcription	Ovary	ovary
2	chr12:11260000-11297000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:11262200-11296400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:11262200-11296800	Weak transcription	Thymus	Thymus
5	chr12:11262200-11314600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:11262800-11318200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:11265400-11297200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:11266400-11296800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr12:11267800-11286400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:11268600-11312600	Weak transcription	Hela-S3	cervix
11	chr12:11270400-11286000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:11270400-11323200	Weak transcription	Fetal Kidney	kidney
13	chr12:11271200-11285000	Weak transcription	Adipose Nuclei	Adipose
14	chr12:11272400-11286200	Weak transcription	NHEK	skin
15	chr12:11273400-11297200	Weak transcription	HUVEC	blood vessel
16	chr12:11273800-11321800	Weak transcription	Osteobl	bone
17	chr12:11275000-11287200	Weak transcription	Fetal Brain Male	brain
18	chr12:11276400-11295800	Weak transcription	Fetal Intestine Large	intestine
19	chr12:11276800-11292200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:11276800-11303600	Weak transcription	HSMM	muscle
21	chr12:11276800-11311800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:11277000-11286200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:11277000-11296000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:11277000-11297600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr12:11278000-11294400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:11278200-11294400	Weak transcription	A549	lung
27	chr12:11278600-11297000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:11279400-11286200	Weak transcription	HMEC	breast
29	chr12:11279400-11311800	Weak transcription	HepG2	liver
30	chr12:11279600-11286400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr12:11279800-11294400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr12:11280000-11293000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:11280000-11295600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr12:11280200-11287000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:11280200-11291800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr12:11280200-11294400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:11280200-11296400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:11281400-11296600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr12:11281600-11285600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:11281800-11284600	Strong transcription	Dnd41	blood
41	chr12:11282000-11286200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:11282000-11291400	Weak transcription	Fetal Intestine Small	intestine
43	chr12:11282000-11297000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr12:11282000-11303600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:11282200-11286200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr12:11282200-11294400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr12:11282200-11294400	Weak transcription	Fetal Stomach	stomach
48	chr12:11282200-11303400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr12:11282400-11292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:11282400-11292000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links