Variant report

Variant	rs2710105
Chromosome Location	chr7:147574236-147574237
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10233374	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs10238572	0.82[JPT][hapmap]
rs10246256	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs1177007	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1186173	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1861010	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2160017	0.80[CHB][hapmap]
rs2247137	0.95[YRI][hapmap]
rs2247143	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2373269	0.85[CHB][hapmap];0.85[YRI][hapmap]
rs2373270	0.85[CHB][hapmap];0.85[YRI][hapmap]
rs2373273	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2538972	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538974	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538976	0.96[CEU][hapmap]
rs2538979	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538981	0.96[CEU][hapmap]
rs2538983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538988	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2538989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2538992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2538994	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2708238	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2708239	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2708240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2708243	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2708257	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2708270	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710102	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710104	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2710107	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2710108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710114	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710117	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2710120	0.96[CEU][hapmap]
rs2710121	0.82[JPT][hapmap]
rs2710139	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710140	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2888536	0.85[CHB][hapmap];0.85[YRI][hapmap]
rs4140925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4308647	0.80[CHB][hapmap]
rs4726893	0.81[CHB][hapmap]
rs6955775	0.81[CHB][hapmap]
rs6958954	0.80[CHB][hapmap]
rs759177	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs759178	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7794345	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs851712	0.88[CEU][hapmap]
rs851713	0.88[CEU][hapmap]
rs851715	0.90[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv889398	chr7:147569595-147588768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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