Variant report

Variant	rs2710109
Chromosome Location	chr7:147595362-147595363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11561915	0.94[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11561916	0.94[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11761543	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11771110	0.81[JPT][hapmap]
rs11980029	0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12533758	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs13234998	0.81[JPT][hapmap]
rs13235220	0.81[JPT][hapmap]
rs17237331	0.94[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861009	0.94[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2215798	0.98[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2538963	0.83[ASW][hapmap];0.98[GIH][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap]
rs2538964	0.94[CEU][hapmap];0.81[YRI][hapmap]
rs2538973	0.94[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2538975	0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2538976	0.84[LWK][hapmap]
rs2708242	0.84[AFR][1000 genomes]
rs2708244	0.81[JPT][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2708259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2710101	0.94[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2710103	0.94[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2710106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34126004	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34902210	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57708946	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58175733	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6946545	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2710109	C7orf29	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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