Variant report

Variant	rs2710117
Chromosome Location	chr7:147601772-147601773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10233374	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10238572	0.91[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs10246256	0.89[JPT][hapmap]
rs1177007	0.94[JPT][hapmap]
rs1186173	0.88[JPT][hapmap]
rs1861010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922892	0.93[ASN][1000 genomes]
rs2247042	0.92[ASN][1000 genomes]
rs2247043	0.93[ASN][1000 genomes]
rs2247137	0.93[ASN][1000 genomes]
rs2247143	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2247149	0.93[ASN][1000 genomes]
rs2373273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2538972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2538974	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2538977	0.93[ASN][1000 genomes]
rs2538979	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538983	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538984	0.93[ASN][1000 genomes]
rs2538985	0.93[ASN][1000 genomes]
rs2538986	0.93[ASN][1000 genomes]
rs2538987	0.93[ASN][1000 genomes]
rs2538988	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538989	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538990	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538991	0.93[ASN][1000 genomes]
rs2538992	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2538994	0.81[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2708238	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2708239	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2708240	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2708241	0.93[ASN][1000 genomes]
rs2708243	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2708255	0.88[ASN][1000 genomes]
rs2708257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2708258	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2708270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2710096	0.93[ASN][1000 genomes]
rs2710102	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2710104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710105	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2710107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710108	1.00[JPT][hapmap]
rs2710114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2710118	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2710119	0.90[EUR][1000 genomes]
rs2710121	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2710139	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2710140	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4140925	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs759177	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs759178	0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7794345	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs851715	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147600600-147601800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:147600600-147601800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:147600800-147601800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:147600800-147601800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:147600800-147601800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:147600800-147601800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:147600800-147601800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:147600800-147601800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:147601000-147602200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:147601400-147606600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:147601600-147606400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links