Variant report

Variant	rs2710121
Chromosome Location	chr7:147608448-147608449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10238572	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1186173	0.82[JPT][hapmap]
rs1861010	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1922892	0.86[ASN][1000 genomes]
rs2247042	0.85[ASN][1000 genomes]
rs2247043	0.86[ASN][1000 genomes]
rs2247137	0.86[ASN][1000 genomes]
rs2247143	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2247149	0.86[ASN][1000 genomes]
rs2373273	0.91[CHB][hapmap];0.83[JPT][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2538972	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2538974	0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2538977	0.86[ASN][1000 genomes]
rs2538979	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2538983	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2538984	0.86[ASN][1000 genomes]
rs2538985	0.86[ASN][1000 genomes]
rs2538986	0.86[ASN][1000 genomes]
rs2538987	0.86[ASN][1000 genomes]
rs2538988	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2538989	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2538990	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2538991	0.86[ASN][1000 genomes]
rs2538992	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2708238	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2708239	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2708240	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2708241	0.86[ASN][1000 genomes]
rs2708243	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2708255	0.94[ASN][1000 genomes]
rs2708257	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2708258	0.91[ASN][1000 genomes]
rs2708270	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2710096	0.86[ASN][1000 genomes]
rs2710102	0.83[JPT][hapmap]
rs2710104	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2710105	0.82[JPT][hapmap]
rs2710107	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2710108	0.83[JPT][hapmap]
rs2710114	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2710117	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2710118	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2710119	0.91[EUR][1000 genomes]
rs2710139	0.83[JPT][hapmap]
rs2710140	0.83[JPT][hapmap]
rs4140925	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4725747	0.83[CHB][hapmap]
rs759177	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs759178	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs7794345	0.83[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:147606400-147608600	Enhancers	Fetal Muscle Leg	muscle
3	chr7:147606600-147608600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose
5	chr7:147607000-147609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:147607200-147608600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:147607200-147612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:147608000-147609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:147608200-147608600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:147608200-147608800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:147608200-147608800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr7:147608200-147609200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:147608200-147609800	Enhancers	Fetal Lung	lung
18	chr7:147608200-147610000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:147608200-147610000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr7:147608200-147610000	Enhancers	Brain Substantia Nigra	brain
21	chr7:147608400-147608600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:147608400-147609600	Enhancers	Psoas Muscle	Psoas

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