Variant report
| Variant | rs2714885 |
|---|---|
| Chromosome Location | chr4:148229203-148229204 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12650484 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1395818 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1507486 | 0.87[EUR][1000 genomes] |
| rs17473962 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17473990 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17474227 | 1.00[ASN][1000 genomes] |
| rs1816279 | 1.00[ASN][1000 genomes] |
| rs1857978 | 0.87[EUR][1000 genomes] |
| rs2063130 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2562864 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2562885 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2714893 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2714896 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4333163 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62342965 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62342966 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62342967 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62342970 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62342993 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62343017 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62343027 | 1.00[ASN][1000 genomes] |
| rs6537453 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7662895 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024629 | chr4:147987351-148277008 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv830108 | chr4:148114652-148311104 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2714885 | SS18 | trans | brain | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:148225400-148229400 | Weak transcription | Fetal Kidney | kidney |
| 2 | chr4:148227800-148230400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
