Variant report

Variant	rs271561
Chromosome Location	chr18:30694844-30694845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs11660410	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1391025	0.93[EUR][1000 genomes]
rs1482946	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs156186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs156366	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs156367	0.84[ASN][1000 genomes]
rs156368	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs156369	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600999	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166639	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16964280	0.98[ASN][1000 genomes]
rs16964286	0.98[ASN][1000 genomes]
rs16964310	0.95[ASN][1000 genomes]
rs16964459	0.93[EUR][1000 genomes]
rs182105	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs190614	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1908944	0.95[ASN][1000 genomes]
rs200432	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2626370	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs271435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs271436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs271437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs271438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271443	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271444	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271445	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271446	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271447	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271448	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271449	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271450	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271451	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271452	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271453	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271462	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271463	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271469	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs271480	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271482	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271483	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271484	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271486	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271487	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs271490	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271491	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271492	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271493	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271494	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271495	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271497	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271498	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271499	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271500	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271502	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271503	0.91[EUR][1000 genomes]
rs271526	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271527	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271528	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271529	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271530	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271531	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271532	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271537	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271538	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271539	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271540	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs271559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271560	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271570	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271571	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271572	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271573	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271575	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271577	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271578	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271579	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271581	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs271582	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs271583	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs273023	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs273024	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs273025	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs273026	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs273027	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs273028	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28368446	0.84[ASN][1000 genomes]
rs28378753	0.95[ASN][1000 genomes]
rs28394340	0.93[EUR][1000 genomes]
rs28504670	0.98[ASN][1000 genomes]
rs402801	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs418480	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4383225	0.93[EUR][1000 genomes]
rs4405623	0.90[EUR][1000 genomes]
rs4432316	0.93[EUR][1000 genomes]
rs4455039	0.93[EUR][1000 genomes]
rs4494628	0.93[EUR][1000 genomes]
rs4573999	0.93[EUR][1000 genomes]
rs457802	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs458002	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4600534	0.93[EUR][1000 genomes]
rs4632197	0.93[EUR][1000 genomes]
rs4633796	0.93[EUR][1000 genomes]
rs463489	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs466500	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs466881	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56092912	0.95[ASN][1000 genomes]
rs56292815	0.98[ASN][1000 genomes]
rs56959895	0.93[EUR][1000 genomes]
rs56983919	0.98[ASN][1000 genomes]
rs57358360	0.93[EUR][1000 genomes]
rs7238193	0.91[ASN][1000 genomes]
rs72943339	0.95[ASN][1000 genomes]
rs72943344	0.95[ASN][1000 genomes]
rs72943354	0.95[ASN][1000 genomes]
rs72943360	0.95[ASN][1000 genomes]
rs72945329	0.95[ASN][1000 genomes]
rs72945332	0.95[ASN][1000 genomes]
rs72945335	0.95[ASN][1000 genomes]
rs72945346	0.95[ASN][1000 genomes]
rs72945351	0.95[ASN][1000 genomes]
rs72945380	0.95[ASN][1000 genomes]
rs72947150	0.95[ASN][1000 genomes]
rs72947170	0.85[ASN][1000 genomes]
rs72947172	0.84[ASN][1000 genomes]
rs72947174	0.84[ASN][1000 genomes]
rs8082980	0.95[ASN][1000 genomes]
rs8085506	0.91[ASN][1000 genomes]
rs8085979	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8090816	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs968668	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9947012	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30694200-30695600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr18:30694200-30695600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:30694200-30695600	Weak transcription	Stomach Mucosa	stomach
4	chr18:30694800-30696400	Enhancers	Pancreatic Islets	Pancreatic Islet

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