Variant report

Variant	rs271562
Chromosome Location	chr18:30695175-30695176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs149338	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs156185	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1693343	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185631	1.00[ASN][1000 genomes]
rs271433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271442	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271460	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271461	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271485	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271501	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271507	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271508	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271533	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271534	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271535	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271536	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271574	1.00[ASN][1000 genomes]
rs271576	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28426669	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28713516	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs382574	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4416091	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500823	1.00[ASN][1000 genomes]
rs4572484	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs463070	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490610	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6507002	1.00[ASN][1000 genomes]
rs6507003	1.00[ASN][1000 genomes]
rs7227131	1.00[ASN][1000 genomes]
rs7234027	1.00[ASN][1000 genomes]
rs7237260	1.00[ASN][1000 genomes]
rs73415473	1.00[ASN][1000 genomes]
rs8182395	1.00[ASN][1000 genomes]
rs9965081	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9966556	1.00[ASN][1000 genomes]
rs9967106	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967219	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30694200-30695600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr18:30694200-30695600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:30694200-30695600	Weak transcription	Stomach Mucosa	stomach
4	chr18:30694800-30696400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr18:30695000-30695600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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