Variant report
| Variant | rs271574 |
|---|---|
| Chromosome Location | chr18:30708940-30708941 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs149338 | 1.00[ASN][1000 genomes] |
| rs156185 | 1.00[ASN][1000 genomes] |
| rs1693343 | 1.00[ASN][1000 genomes] |
| rs185631 | 1.00[ASN][1000 genomes] |
| rs271433 | 1.00[ASN][1000 genomes] |
| rs271442 | 1.00[ASN][1000 genomes] |
| rs271460 | 1.00[ASN][1000 genomes] |
| rs271461 | 1.00[ASN][1000 genomes] |
| rs271485 | 1.00[ASN][1000 genomes] |
| rs271501 | 1.00[ASN][1000 genomes] |
| rs271507 | 1.00[ASN][1000 genomes] |
| rs271508 | 1.00[ASN][1000 genomes] |
| rs271533 | 1.00[ASN][1000 genomes] |
| rs271534 | 1.00[ASN][1000 genomes] |
| rs271535 | 1.00[ASN][1000 genomes] |
| rs271536 | 1.00[ASN][1000 genomes] |
| rs271562 | 1.00[ASN][1000 genomes] |
| rs271563 | 1.00[ASN][1000 genomes] |
| rs271576 | 1.00[ASN][1000 genomes] |
| rs28426669 | 1.00[ASN][1000 genomes] |
| rs28713516 | 1.00[ASN][1000 genomes] |
| rs382574 | 1.00[ASN][1000 genomes] |
| rs4416091 | 1.00[ASN][1000 genomes] |
| rs4500823 | 1.00[ASN][1000 genomes] |
| rs4572484 | 1.00[ASN][1000 genomes] |
| rs463070 | 1.00[ASN][1000 genomes] |
| rs490610 | 1.00[ASN][1000 genomes] |
| rs6507002 | 1.00[ASN][1000 genomes] |
| rs6507003 | 1.00[ASN][1000 genomes] |
| rs7227131 | 1.00[ASN][1000 genomes] |
| rs7234027 | 1.00[ASN][1000 genomes] |
| rs7237260 | 1.00[ASN][1000 genomes] |
| rs73415473 | 1.00[ASN][1000 genomes] |
| rs8182395 | 1.00[ASN][1000 genomes] |
| rs9965081 | 1.00[ASN][1000 genomes] |
| rs9966556 | 1.00[ASN][1000 genomes] |
| rs9967106 | 1.00[ASN][1000 genomes] |
| rs9967219 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909527 | chr18:30548902-30908581 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058332 | chr18:30587430-30775498 | Enhancers Flanking Active TSS Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:30708400-30709400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr18:30708600-30709200 | Enhancers | Brain Germinal Matrix | brain |
