Variant report

Variant	rs2719310
Chromosome Location	chr8:34193425-34193426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1014494	0.82[ASN][1000 genomes]
rs1014495	0.82[ASN][1000 genomes]
rs13274419	0.82[ASN][1000 genomes]
rs1551654	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881977	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168962	0.81[EUR][1000 genomes]
rs2590454	0.82[ASN][1000 genomes]
rs2590461	0.89[ASN][1000 genomes]
rs2590462	0.89[ASN][1000 genomes]
rs2590465	0.89[ASN][1000 genomes]
rs2590466	0.89[ASN][1000 genomes]
rs2590467	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590468	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590476	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590479	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609600	0.89[ASN][1000 genomes]
rs2609603	0.82[ASN][1000 genomes]
rs2609610	0.82[ASN][1000 genomes]
rs2609614	0.82[ASN][1000 genomes]
rs2609617	0.82[ASN][1000 genomes]
rs2609618	0.82[ASN][1000 genomes]
rs2609620	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2609627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609649	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609650	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2609651	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609654	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2719277	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719278	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719288	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719299	0.89[ASN][1000 genomes]
rs2719300	0.89[ASN][1000 genomes]
rs2719305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719311	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719312	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719315	0.82[ASN][1000 genomes]
rs2719316	0.82[ASN][1000 genomes]
rs2719329	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404543	0.82[EUR][1000 genomes]
rs2953927	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953928	0.96[ASN][1000 genomes]
rs2953930	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953931	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953932	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953934	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2953935	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2959322	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959323	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2978835	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978837	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4327859	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4739544	0.95[AFR][1000 genomes]
rs6987252	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6988455	0.82[ASN][1000 genomes]
rs978438	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978439	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981752	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34184400-34195800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:34192400-34194200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:34192600-34193600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:34192800-34193600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:34193000-34193600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:34193000-34193600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:34193000-34193800	Enhancers	Brain Germinal Matrix	brain
8	chr8:34193000-34194000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:34193200-34193600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:34193200-34193800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:34193200-34194200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:34193200-34194200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:34193400-34193800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:34193400-34193800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:34193400-34194200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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