Variant report

Variant	rs2719322
Chromosome Location	chr8:34185543-34185544
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2168962	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2590469	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2609620	0.98[ASN][1000 genomes]
rs2609633	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2719311	0.86[EUR][1000 genomes]
rs2719320	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2719321	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404543	0.91[ASN][1000 genomes]
rs2953926	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2953929	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2953934	0.98[ASN][1000 genomes]
rs2953935	0.98[ASN][1000 genomes]
rs2959323	0.98[ASN][1000 genomes]
rs2959325	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2978837	0.99[ASN][1000 genomes]
rs4739544	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987252	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2719322	FGFR1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34182000-34185600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:34184400-34186000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:34184400-34195800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:34185400-34186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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