Variant report

Variant	rs2731435
Chromosome Location	chr12:51022488-51022489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302812	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs12367373	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1866422	0.86[YRI][hapmap]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	1.00[EUR][1000 genomes]
rs2037453	0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.81[AFR][1000 genomes]
rs2253376	0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731437	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.87[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768908	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs4768910	1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580749	1.00[EUR][1000 genomes]
rs6580750	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	1.00[EUR][1000 genomes]
rs7133107	1.00[EUR][1000 genomes]
rs7302222	1.00[EUR][1000 genomes]
rs7309410	1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7310686	1.00[EUR][1000 genomes]
rs7312349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7314198	1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7963866	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs939634	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014400-51030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:51015000-51027600	Weak transcription	NHDF-Ad	bronchial
5	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
6	chr12:51016000-51027600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:51016000-51028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:51016000-51030400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:51016000-51030600	Weak transcription	Psoas Muscle	Psoas
10	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
11	chr12:51016200-51030400	Weak transcription	Brain Germinal Matrix	brain
12	chr12:51016200-51035400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:51016600-51039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:51017000-51027600	Weak transcription	NHEK	skin
15	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:51018800-51027800	Weak transcription	Left Ventricle	heart
17	chr12:51019400-51028200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr12:51019600-51023600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:51019600-51025400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:51019600-51030000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr12:51019600-51031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr12:51019600-51031200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:51019800-51023800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr12:51019800-51030400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:51019800-51031400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr12:51020000-51023600	Strong transcription	Primary T cells from cord blood	blood
28	chr12:51020000-51026200	Strong transcription	Fetal Thymus	thymus
29	chr12:51020000-51028000	Weak transcription	Fetal Heart	heart
30	chr12:51020000-51031400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr12:51020200-51023400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr12:51020200-51023600	Strong transcription	GM12878-XiMat	blood
33	chr12:51020200-51024000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr12:51020200-51025000	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr12:51020200-51026200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr12:51020200-51028200	Weak transcription	Colon Smooth Muscle	Colon
37	chr12:51020200-51030400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:51020400-51022600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr12:51020400-51023200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:51020400-51023600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:51020400-51024000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:51020400-51024000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr12:51020400-51025000	Weak transcription	Fetal Brain Male	brain
44	chr12:51020400-51025400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:51020400-51026400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr12:51020400-51026600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr12:51020400-51026800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr12:51020400-51027600	Weak transcription	Osteobl	bone
49	chr12:51020400-51028200	Weak transcription	Small Intestine	intestine
50	chr12:51020600-51023200	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links