Variant report

Variant	rs2731445
Chromosome Location	chr12:51017035-51017036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51014624..51017594-chr12:51125519..51128159,2	MCF-7	breast:
2	chr12:51011614..51015432-chr12:51015649..51019939,6	MCF-7	breast:
3	chr12:51010106..51013321-chr12:51014428..51017771,4	K562	blood:
4	chr12:51015875..51020257-chr12:51020735..51026058,6	MCF-7	breast:
5	chr12:51008977..51011248-chr12:51015762..51017787,2	MCF-7	breast:
6	chr12:51011830..51013610-chr12:51014850..51017833,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10083076	1.00[EUR][1000 genomes]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10783360	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs12367373	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	1.00[EUR][1000 genomes]
rs2037453	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2253376	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768908	1.00[EUR][1000 genomes]
rs4768910	1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580749	1.00[EUR][1000 genomes]
rs6580750	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	1.00[EUR][1000 genomes]
rs7133107	1.00[EUR][1000 genomes]
rs7302222	1.00[EUR][1000 genomes]
rs7309410	1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7310686	1.00[EUR][1000 genomes]
rs7312349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7314198	1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7963866	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	1.00[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	1.00[EUR][1000 genomes]
rs939634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50994600-51018600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:51007000-51017600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51012000-51017800	Enhancers	Duodenum Mucosa	Duodenum
4	chr12:51012000-51020000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:51012000-51020200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr12:51012200-51019800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr12:51012800-51018200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:51012800-51018400	Enhancers	Pancreas	Pancrea
9	chr12:51012800-51020200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:51013000-51019600	Enhancers	Fetal Thymus	thymus
11	chr12:51013000-51020000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:51013400-51019800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
14	chr12:51014000-51020600	Enhancers	Fetal Lung	lung
15	chr12:51014400-51021400	Weak transcription	Lung	lung
16	chr12:51014400-51030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:51014800-51018000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:51014800-51018400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:51014800-51020800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:51015000-51017200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:51015000-51021400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:51015000-51027600	Weak transcription	NHDF-Ad	bronchial
24	chr12:51015200-51018000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:51015200-51018400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:51015600-51020200	Weak transcription	Placenta	Placenta
27	chr12:51015600-51021400	Weak transcription	Right Ventricle	heart
28	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
29	chr12:51015800-51017200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr12:51015800-51018000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr12:51015800-51019400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr12:51015800-51020000	Weak transcription	NHLF	lung
33	chr12:51015800-51020200	Enhancers	Brain Hippocampus Middle	brain
34	chr12:51015800-51020400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:51015800-51021200	Weak transcription	Gastric	stomach
36	chr12:51015800-51021200	Weak transcription	Hela-S3	cervix
37	chr12:51016000-51017200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr12:51016000-51017200	Weak transcription	Fetal Stomach	stomach
39	chr12:51016000-51017400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr12:51016000-51017600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr12:51016000-51017600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr12:51016000-51017600	Weak transcription	Adipose Nuclei	Adipose
43	chr12:51016000-51017600	Weak transcription	Spleen	Spleen
44	chr12:51016000-51017800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:51016000-51018000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr12:51016000-51018000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr12:51016000-51018000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:51016000-51018000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr12:51016000-51018000	Weak transcription	K562	blood
50	chr12:51016000-51018200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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