Variant report

Variant	rs2731446
Chromosome Location	chr12:51080673-51080674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51080135..51083273-chr12:51084470..51087512,4	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307085	1.00[AMR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.93[AFR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1866422	0.83[YRI][hapmap]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252608	0.82[AFR][1000 genomes]
rs2253376	0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2468378	0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684905	0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700481	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	1.00[YRI][hapmap]
rs2731437	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731441	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4238103	1.00[EUR][1000 genomes]
rs4259895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4334109	1.00[EUR][1000 genomes]
rs4491331	1.00[EUR][1000 genomes]
rs4617660	1.00[EUR][1000 genomes]
rs4768896	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768908	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768910	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580762	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7312349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7313783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7954152	1.00[EUR][1000 genomes]
rs7966009	1.00[EUR][1000 genomes]
rs7976281	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs939634	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
5	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
10	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
12	chr12:51062600-51091800	Strong transcription	Liver	Liver
13	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
17	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:51065200-51081800	Weak transcription	Spleen	Spleen
22	chr12:51067200-51082600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr12:51067400-51085400	Strong transcription	Primary B cells from cord blood	blood
26	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
32	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
33	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:51071000-51089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr12:51071400-51083800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:51072000-51083800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr12:51072000-51089000	Weak transcription	NHDF-Ad	bronchial
39	chr12:51072200-51083000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr12:51072200-51089200	Weak transcription	Fetal Brain Male	brain
41	chr12:51072600-51084400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr12:51073000-51090600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr12:51074200-51084800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr12:51074200-51087800	Strong transcription	Fetal Intestine Large	intestine
45	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr12:51074800-51083800	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr12:51075000-51083800	Strong transcription	Brain Anterior Caudate	brain
50	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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