Variant report

Variant	rs2734833
Chromosome Location	chr11:113292920-113292921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:113292689-113293095	HEK293-T-REx	kidney:	n/a	chr11:113292889-113292910
2	CTCF	chr11:113292820-113292970	Caco-2	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113282501..113284642-chr11:113290868..113293488,2	K562	blood:

Variant related genes	Relation type
DRD2	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1076563	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1078	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10789942	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10891540	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10891544	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10891547	1.00[ASN][1000 genomes]
rs10891548	1.00[ASN][1000 genomes]
rs10891549	1.00[ASN][1000 genomes]
rs1107162	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1116313	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11214587	1.00[JPT][hapmap]
rs11214594	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11214595	0.97[ASN][1000 genomes]
rs11214596	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11214603	1.00[ASN][1000 genomes]
rs11214605	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11214608	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11214609	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11604671	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11608109	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11608185	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360992	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12363125	0.95[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364051	0.95[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12798900	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12800853	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12808482	1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554929	1.00[ASN][1000 genomes]
rs17529477	1.00[JPT][hapmap]
rs17600713	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1800498	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155463	0.84[ASN][1000 genomes]
rs2186799	1.00[JPT][hapmap]
rs2234690	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2587548	0.95[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734831	0.85[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734832	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734835	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734837	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734838	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734839	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2734849	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34601878	0.97[ASN][1000 genomes]
rs35023999	1.00[ASN][1000 genomes]
rs4438071	1.00[JPT][hapmap]
rs4587762	0.89[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4938017	0.95[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6277	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7116782	0.84[ASN][1000 genomes]
rs7122246	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131440	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131465	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131627	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131681	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs754672	0.84[ASN][1000 genomes]
rs877137	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2734833	TTC12	cis	lesional skin	skin_eQTL
rs2734833	TTC12	cis	uninvolved skin	skin_eQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113278600-113300200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:113287800-113295000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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