Variant report

Variant	rs2735588
Chromosome Location	chr1:85731321-85731322
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85730097..85732831-chr1:85733778..85736278,2	K562	blood:
2	chr1:85731137..85733599-chr1:85736126..85739884,4	MCF-7	breast:
3	chr1:85723982..85727421-chr1:85728589..85731374,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162642	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11161574	0.89[ASN][1000 genomes]
rs2252408	0.89[ASN][1000 genomes]
rs2647396	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2735587	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2735591	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2735592	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2735593	0.88[ASN][1000 genomes]
rs2735594	0.88[ASN][1000 genomes]
rs4949926	0.87[ASN][1000 genomes]
rs6693365	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv34165	chr1:85542040-85846249	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv830459	chr1:85589585-85786311	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85725400-85732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85725400-85732200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:85725400-85733200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:85725400-85734600	Weak transcription	Small Intestine	intestine
5	chr1:85725400-85741000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:85725600-85732200	Weak transcription	Thymus	Thymus
7	chr1:85725600-85734600	Weak transcription	Lung	lung
8	chr1:85725600-85737000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:85725800-85731600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:85725800-85731600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:85725800-85731800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:85725800-85731800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:85725800-85732200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:85725800-85732200	Weak transcription	Colonic Mucosa	Colon
15	chr1:85725800-85732800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:85725800-85733800	Weak transcription	Brain Germinal Matrix	brain
17	chr1:85725800-85734600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:85725800-85734600	Weak transcription	Esophagus	oesophagus
19	chr1:85725800-85734800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:85725800-85739400	Weak transcription	Aorta	Aorta
21	chr1:85726000-85732200	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:85726000-85732200	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:85726000-85732200	Weak transcription	Fetal Kidney	kidney
24	chr1:85726000-85732200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:85726000-85732200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:85726000-85732200	Weak transcription	Spleen	Spleen
27	chr1:85726000-85732400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:85726000-85732600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:85726000-85732800	Weak transcription	K562	blood
30	chr1:85726000-85733000	Weak transcription	A549	lung
31	chr1:85726000-85734000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:85726000-85734000	Weak transcription	Ovary	ovary
33	chr1:85726000-85734200	Weak transcription	Brain Anterior Caudate	brain
34	chr1:85726000-85734400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:85726000-85734400	Weak transcription	Fetal Heart	heart
36	chr1:85726000-85734400	Weak transcription	HepG2	liver
37	chr1:85726000-85734600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:85726000-85734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:85726000-85734600	Weak transcription	Fetal Brain Male	brain
40	chr1:85726000-85734600	Weak transcription	Right Ventricle	heart
41	chr1:85726000-85734800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr1:85726000-85741000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:85726000-85741400	Weak transcription	Gastric	stomach
44	chr1:85726200-85731600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:85726200-85732200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:85726200-85732200	Weak transcription	HSMMtube	muscle
47	chr1:85726200-85732200	Weak transcription	NHLF	lung
48	chr1:85726200-85733000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr1:85726200-85734600	Weak transcription	Fetal Brain Female	brain
50	chr1:85726200-85735200	Weak transcription	Brain Substantia Nigra	brain

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