Variant report

Variant	rs2742206
Chromosome Location	chrX:78203774-78203775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3123295	0.88[TSI][hapmap]
rs5912198	1.00[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap]
rs5959211	1.00[ASW][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap]
rs5959237	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2742206	GPR23	cis	multi-tissue	Pritchard

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78197600-78205200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chrX:78200200-78203800	Active TSS	Primary B cells from cord blood	blood
3	chrX:78200200-78204200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chrX:78200400-78205200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chrX:78200600-78203800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:78200600-78204200	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chrX:78200600-78204600	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chrX:78200600-78205200	Active TSS	Primary T cells fromperipheralblood	blood
9	chrX:78200600-78205400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chrX:78200800-78204800	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chrX:78200800-78205000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chrX:78200800-78205000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chrX:78200800-78205200	Active TSS	Primary B cells from peripheral blood	blood
14	chrX:78200800-78205200	Active TSS	GM12878-XiMat	blood
15	chrX:78201200-78203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chrX:78201200-78205000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chrX:78201200-78206000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chrX:78201800-78205600	Weak transcription	Dnd41	blood
19	chrX:78202000-78205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chrX:78202000-78205400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chrX:78202400-78204000	Active TSS	Primary T helper cells fromperipheralblood	blood
22	chrX:78202400-78213600	Weak transcription	Fetal Thymus	thymus
23	chrX:78202800-78204400	Weak transcription	Primary hematopoietic stem cells	blood
24	chrX:78202800-78205400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chrX:78203400-78204200	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chrX:78203600-78204000	Active TSS	Primary T cells from cord blood	blood
27	chrX:78203600-78207800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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