Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1205110	0.97[AFR][1000 genomes]
rs1211240	0.89[AFR][1000 genomes]
rs1925146	1.00[CHD][hapmap]
rs2328691	0.85[YRI][hapmap]
rs2764044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2764045	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2840993	0.95[AFR][1000 genomes]
rs2840996	0.87[AFR][1000 genomes]
rs35583895	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56914723	0.82[AFR][1000 genomes]
rs6903824	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443748	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445357	0.87[AFR][1000 genomes]
rs73461350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461356	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461361	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475577	1.00[MEX][hapmap];0.80[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56021600-56033200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:56021800-56033000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:56021800-56033000	Weak transcription	Fetal Stomach	stomach
6	chr6:56021800-56035800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:56021800-56036800	Weak transcription	Placenta	Placenta
8	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
9	chr6:56027400-56033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:56028800-56035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:56031200-56033400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:56031600-56033400	Weak transcription	NHEK	skin
13	chr6:56032000-56033400	Weak transcription	Osteobl	bone
14	chr6:56032000-56035000	Weak transcription	Fetal Lung	lung
15	chr6:56032400-56033400	Weak transcription	NHDF-Ad	bronchial

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