Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:133008525..133010705-chr6:133141120..133143788,2	K562	blood:
2	chr6:133008587..133011084-chr6:133135218..133137438,2	MCF-7	breast:
3	chr6:133008010..133010511-chr6:133135141..133137860,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1044593	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs1073954	0.85[EUR][1000 genomes]
rs12195735	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs2050154	0.84[EUR][1000 genomes]
rs2223613	0.82[CEU][hapmap]
rs2251449	0.87[CEU][hapmap]
rs2251455	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745426	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745427	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745429	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745430	0.85[EUR][1000 genomes]
rs2745440	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745444	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745445	0.85[EUR][1000 genomes]
rs2840813	0.85[EUR][1000 genomes]
rs2840825	0.82[CEU][hapmap]
rs3823026	0.87[CEU][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4897605	0.85[EUR][1000 genomes]
rs6941705	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs909977	0.86[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133002200-133014600	Strong transcription	Liver	Liver
2	chr6:133004800-133016400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:133005200-133011000	Weak transcription	Gastric	stomach
4	chr6:133007200-133010800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:133008600-133009200	Enhancers	HMEC	breast
6	chr6:133008800-133009600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:133008800-133010400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:133008800-133016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:133009000-133009400	Enhancers	NHEK	skin
10	chr6:133009000-133011000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:133009000-133011200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:133009000-133011600	Weak transcription	Stomach Mucosa	stomach

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