Variant report

Variant	rs2745444
Chromosome Location	chr6:133021433-133021434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133020436..133022500-chr6:133134393..133136063,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1044593	0.95[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1073954	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2050154	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2223613	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2247269	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2247284	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2247285	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2251449	0.95[CEU][hapmap];0.89[JPT][hapmap]
rs2251455	0.95[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2262437	1.00[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs2262438	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2300077	0.95[CEU][hapmap]
rs2327275	0.89[EUR][1000 genomes]
rs2745426	0.95[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2745427	0.95[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2745429	0.95[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2745430	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2745431	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2745435	0.89[EUR][1000 genomes]
rs2745436	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2745437	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2745439	1.00[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs2745440	0.95[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745441	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2745442	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2745443	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2745445	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2840812	0.89[ASN][1000 genomes]
rs2840813	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2840815	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840816	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840817	1.00[CEU][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs2840818	0.89[EUR][1000 genomes]
rs2840819	0.85[EUR][1000 genomes]
rs2840820	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2840821	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840822	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840823	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840824	0.89[EUR][1000 genomes]
rs2840825	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2840826	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3798792	0.95[CEU][hapmap]
rs3823026	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4897600	0.87[EUR][1000 genomes]
rs4897604	0.87[EUR][1000 genomes]
rs4897605	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4897612	0.95[CEU][hapmap]
rs6936833	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6938196	0.89[EUR][1000 genomes]
rs6941705	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs909975	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs909977	0.95[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389027	1.00[CEU][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs9399038	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs990499	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs990500	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2745444	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133017800-133032200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:133018200-133028400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:133020000-133024000	Weak transcription	Aorta	Aorta
4	chr6:133020400-133023000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:133020400-133023600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:133021200-133022600	Weak transcription	Liver	Liver

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