Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106208935-106211212	GM12892	blood:	n/a	n/a
2	POLR2A	chr14:106209705-106209889	GM12878	blood:	n/a	n/a
3	POLR2A	chr14:106207730-106209995	GM12878	blood:	n/a	n/a
4	POLR2A	chr14:106207896-106210065	GM18526	blood:	n/a	n/a
5	POLR2A	chr14:106207414-106210091	GM18505	blood:	n/a	n/a
6	POLR2A	chr14:106209066-106211020	GM12892	blood:	n/a	n/a
7	CTCF	chr14:106209823-106209920	GM20000	blood:	n/a	n/a
8	POLR2A	chr14:106207433-106210080	GM19099	blood:	n/a	n/a
9	POLR2A	chr14:106204374-106209879	GM12878	blood:	n/a	n/a
10	POLR2A	chr14:106206098-106212496	GM12892	blood:	n/a	n/a
11	POLR2A	chr14:106206198-106212474	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
IGHG1	TF binding region

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130064	1.00[EUR][1000 genomes]
rs10140012	1.00[EUR][1000 genomes]
rs10147883	1.00[EUR][1000 genomes]
rs11552998	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623609	1.00[EUR][1000 genomes]
rs11845835	1.00[EUR][1000 genomes]
rs11848125	1.00[EUR][1000 genomes]
rs11851505	1.00[EUR][1000 genomes]
rs12431652	1.00[EUR][1000 genomes]
rs12431653	1.00[EUR][1000 genomes]
rs13000	1.00[EUR][1000 genomes]
rs2104053	1.00[EUR][1000 genomes]
rs2753557	1.00[EUR][1000 genomes]
rs28379859	1.00[EUR][1000 genomes]
rs28578923	1.00[EUR][1000 genomes]
rs28581525	1.00[EUR][1000 genomes]
rs28582906	1.00[EUR][1000 genomes]
rs28627103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28719009	1.00[EUR][1000 genomes]
rs3923867	1.00[EUR][1000 genomes]
rs4983362	1.00[EUR][1000 genomes]
rs4983477	1.00[EUR][1000 genomes]
rs4983481	1.00[EUR][1000 genomes]
rs58503622	1.00[EUR][1000 genomes]
rs60701849	1.00[EUR][1000 genomes]
rs61986371	1.00[EUR][1000 genomes]
rs6576114	1.00[EUR][1000 genomes]
rs6576119	1.00[EUR][1000 genomes]
rs6576121	1.00[EUR][1000 genomes]
rs7143643	1.00[EUR][1000 genomes]
rs7151762	1.00[EUR][1000 genomes]
rs7494106	1.00[EUR][1000 genomes]
rs9671515	1.00[EUR][1000 genomes]
rs9671964	1.00[EUR][1000 genomes]
rs9672055	1.00[EUR][1000 genomes]
rs9672072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106204200-106211800	Weak transcription	Placenta	Placenta
2	chr14:106205800-106214000	Weak transcription	Spleen	Spleen
3	chr14:106209400-106210000	Enhancers	Liver	Liver
4	chr14:106209400-106210600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr14:106209800-106210000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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