Variant report

Variant	rs2753559
Chromosome Location	chr14:106241999-106242000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2009068	0.84[ASN][1000 genomes]
rs2070636	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2753560	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106239200-106242600	Flanking Active TSS	Primary B cells from peripheral blood	blood
2	chr14:106239400-106242800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr14:106239800-106242000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:106240000-106242200	Enhancers	Primary B cells from cord blood	blood
5	chr14:106240400-106242000	ZNF genes & repeats	Fetal Brain Female	brain
6	chr14:106240800-106242400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:106241400-106242600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:106241600-106242400	Enhancers	GM12878-XiMat	blood
9	chr14:106241600-106243000	Weak transcription	Spleen	Spleen
10	chr14:106241800-106242000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:106241800-106242200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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