Variant report

Variant rs27542
Chromosome Location chr5:61698822-61698823
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:61642600-61699200 Weak transcription Gastric stomach
2 chr5:61665400-61699000 Weak transcription Esophagus oesophagus
3 chr5:61676800-61699000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:61682200-61699000 Weak transcription Colonic Mucosa Colon
5 chr5:61690400-61699000 Weak transcription H9 Cell Line embryonic stem cell
6 chr5:61690400-61699000 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:61696800-61699000 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr5:61697000-61699000 Weak transcription Placenta Placenta
9 chr5:61697200-61699000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr5:61697200-61699000 Weak transcription Fetal Thymus thymus
11 chr5:61697200-61699000 Weak transcription Left Ventricle heart
12 chr5:61697200-61699000 Weak transcription Lung lung
13 chr5:61697200-61699200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr5:61697200-61699200 Weak transcription Spleen Spleen
15 chr5:61697400-61699000 Weak transcription Pancreas Pancrea
16 chr5:61697400-61699200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr5:61697800-61699000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr5:61697800-61700800 Active TSS NHLF lung
19 chr5:61698000-61699000 Flanking Active TSS Muscle Satellite Cultured Cells --
20 chr5:61698000-61699400 Active TSS Right Atrium heart
21 chr5:61698000-61700200 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
22 chr5:61698000-61700800 Active TSS ES-WA7 Cell Line embryonic stem cell
23 chr5:61698000-61700800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
24 chr5:61698000-61700800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
25 chr5:61698200-61699000 Enhancers Primary B cells from peripheral blood blood
26 chr5:61698200-61699200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
27 chr5:61698200-61699200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr5:61698200-61699200 Flanking Active TSS Fetal Brain Female brain
29 chr5:61698200-61699200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
30 chr5:61698200-61699400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr5:61698200-61700600 Active TSS HUES64 Cell Line embryonic stem cell
32 chr5:61698200-61700600 Active TSS Psoas Muscle Psoas
33 chr5:61698200-61700600 Active TSS Right Ventricle heart
34 chr5:61698200-61700800 Active TSS HUES6 Cell Line embryonic stem cell
35 chr5:61698200-61700800 Active TSS Brain Inferior Temporal Lobe brain
36 chr5:61698200-61701000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:61698400-61699000 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
38 chr5:61698400-61699000 Enhancers Primary monocytes fromperipheralblood blood
39 chr5:61698400-61699000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr5:61698400-61699000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
41 chr5:61698400-61699200 Flanking Active TSS Primary T cells from cord blood blood
42 chr5:61698400-61699200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
43 chr5:61698400-61699200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
44 chr5:61698400-61699200 Flanking Active TSS Brain Hippocampus Middle brain
45 chr5:61698400-61699200 Flanking Active TSS Duodenum Mucosa Duodenum
46 chr5:61698400-61699200 Flanking Active TSS Dnd41 blood
47 chr5:61698400-61699400 Flanking Active TSS Brain Cingulate Gyrus brain
48 chr5:61698400-61699600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr5:61698400-61700400 Active TSS Ovary ovary
50 chr5:61698400-61700600 Active TSS HSMM muscle

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