Variant report

Variant	rs2754316
Chromosome Location	chr9:17537756-17537757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1555420	1.00[CEU][hapmap]
rs1555423	0.90[EUR][1000 genomes]
rs1885168	1.00[CEU][hapmap]
rs2038511	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2038513	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2180903	1.00[CEU][hapmap]
rs2208504	1.00[CEU][hapmap]
rs2248131	1.00[CEU][hapmap]
rs2441988	1.00[CEU][hapmap]
rs2441989	1.00[CEU][hapmap]
rs2441990	1.00[CEU][hapmap]
rs2442006	1.00[CEU][hapmap]
rs2499056	1.00[CEU][hapmap]
rs2593351	1.00[CEU][hapmap]
rs2593373	0.80[ASN][1000 genomes]
rs2593379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593381	0.88[ASN][1000 genomes]
rs2593409	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2754312	1.00[CEU][hapmap]
rs2754313	1.00[CEU][hapmap]
rs2754319	1.00[CEU][hapmap]
rs2754323	1.00[CEU][hapmap]
rs2754334	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2754335	0.80[ASN][1000 genomes]
rs2754339	1.00[CEU][hapmap]
rs4507864	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv613700	chr9:17506782-17554647	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17536800-17538200	Enhancers	Fetal Brain Male	brain

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