Variant report

Variant	rs2758244
Chromosome Location	chr6:64249629-64249630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10943869	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13191932	0.82[EUR][1000 genomes]
rs13200519	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13205487	0.88[EUR][1000 genomes]
rs13217662	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1744134	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744143	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1744153	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1779739	0.83[EUR][1000 genomes]
rs1779777	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2025178	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489272	0.83[EUR][1000 genomes]
rs2622312	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916092	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71534831	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7753325	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2758244	LGSN	cis	Whole Blood	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64240400-64254000	Weak transcription	Psoas Muscle	Psoas
2	chr6:64247800-64252600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:64248800-64252600	Weak transcription	A549	lung
4	chr6:64249000-64249800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:64249400-64250800	Strong transcription	HepG2	liver
6	chr6:64249400-64258200	Weak transcription	Liver	Liver
7	chr6:64249600-64250000	Strong transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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