Variant report
| Variant | rs2759691 |
|---|---|
| Chromosome Location | chr13:53702664-53702665 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1361886 | 0.86[ASN][1000 genomes] |
| rs17054846 | 1.00[EUR][1000 genomes] |
| rs17054878 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17054935 | 1.00[EUR][1000 genomes] |
| rs17054941 | 1.00[EUR][1000 genomes] |
| rs17055207 | 0.86[EUR][1000 genomes] |
| rs17055257 | 0.86[EUR][1000 genomes] |
| rs17055503 | 0.86[EUR][1000 genomes] |
| rs1885768 | 0.86[EUR][1000 genomes] |
| rs1909652 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2226192 | 0.86[ASN][1000 genomes] |
| rs2759678 | 1.00[EUR][1000 genomes] |
| rs2759680 | 1.00[EUR][1000 genomes] |
| rs2759681 | 1.00[EUR][1000 genomes] |
| rs2759696 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2759697 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2759701 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2806979 | 0.86[ASN][1000 genomes] |
| rs2806989 | 1.00[ASN][1000 genomes] |
| rs2806990 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2806992 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2806997 | 1.00[ASN][1000 genomes] |
| rs2806998 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2807007 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs35422016 | 0.86[EUR][1000 genomes] |
| rs7336499 | 1.00[ASN][1000 genomes] |
| rs74086456 | 0.86[ASN][1000 genomes] |
| rs7984449 | 1.00[EUR][1000 genomes] |
| rs7996399 | 1.00[EUR][1000 genomes] |
| rs7997868 | 1.00[EUR][1000 genomes] |
| rs8001825 | 1.00[EUR][1000 genomes] |
| rs877482 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050969 | chr13:53665927-54064861 | Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:53696600-53703800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr13:53697800-53709000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
