Variant report

Variant	rs2761131
Chromosome Location	chr9:15168670-15168671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1746333	0.83[ASN][1000 genomes]
rs35067557	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35836049	0.92[EUR][1000 genomes]
rs4401972	0.92[EUR][1000 genomes]
rs57652096	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:15156400-15171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:15156800-15169000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:15156800-15170200	Weak transcription	Esophagus	oesophagus
7	chr9:15156800-15170800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
12	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:15159000-15170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:15159000-15177000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:15159000-15211200	Weak transcription	HMEC	breast
16	chr9:15159200-15169000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:15161000-15169000	Weak transcription	Fetal Intestine Large	intestine
19	chr9:15161200-15181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:15162000-15170200	Weak transcription	Ovary	ovary
21	chr9:15162000-15181600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:15162000-15183800	Weak transcription	Fetal Intestine Small	intestine
23	chr9:15162800-15193000	Weak transcription	Spleen	Spleen
24	chr9:15163000-15175200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:15163200-15176000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:15163200-15185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr9:15163200-15186800	Weak transcription	Fetal Kidney	kidney
29	chr9:15163400-15179000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:15163400-15181400	Weak transcription	Fetal Stomach	stomach
31	chr9:15163800-15185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:15164000-15170600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:15164200-15169000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:15164200-15170400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr9:15164400-15178400	Weak transcription	Fetal Brain Male	brain
36	chr9:15164600-15172200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:15164800-15169200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr9:15164800-15169200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:15164800-15170600	Weak transcription	HepG2	liver
40	chr9:15165000-15170400	Weak transcription	Stomach Mucosa	stomach
41	chr9:15165200-15176600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:15165400-15181800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr9:15166000-15185200	Weak transcription	Pancreas	Pancrea
44	chr9:15166200-15211200	Weak transcription	NH-A	brain
45	chr9:15166400-15185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr9:15166600-15169000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:15166600-15169000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr9:15166600-15170800	Weak transcription	Fetal Lung	lung
49	chr9:15166600-15173400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:15166600-15173600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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