Variant report

Variant	rs2761688
Chromosome Location	chr9:116722833-116722834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116720397..116723417-chr9:116724656..116727366,3	MCF-7	breast:
2	chr9:116637804..116639938-chr9:116721400..116723278,3	MCF-7	breast:
3	chr9:116716226..116718549-chr9:116720806..116723650,2	K562	blood:

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10119978	0.85[CEU][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10448276	0.93[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10739396	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10759664	0.85[CEU][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10759665	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10759666	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10817541	0.85[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs10982015	0.85[ASN][1000 genomes]
rs10982017	0.85[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs1330166	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536962	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536965	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1536966	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1544102	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2026143	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2418260	0.85[CEU][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2418261	0.94[ASN][1000 genomes]
rs2773396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900570	0.85[CEU][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2900571	0.93[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4979307	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7032101	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7046776	0.82[CEU][hapmap]
rs7869027	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs814680	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs814686	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871806	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116708800-116726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:116710800-116723000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:116712800-116726400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:116716200-116730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:116716800-116723000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:116717000-116723400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:116717000-116730000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:116717000-116733200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:116717400-116735600	Weak transcription	Fetal Heart	heart
11	chr9:116717600-116730200	Weak transcription	Psoas Muscle	Psoas
12	chr9:116717800-116724800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:116718000-116731400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:116718400-116728600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:116718600-116731000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:116720000-116726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:116720000-116726400	Weak transcription	Right Ventricle	heart
18	chr9:116720000-116728000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:116720000-116728000	Weak transcription	Spleen	Spleen
20	chr9:116720400-116731400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:116720400-116731400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:116720400-116731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr9:116720600-116723400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:116720800-116723400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr9:116720800-116723800	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:116720800-116724800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:116720800-116724800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:116720800-116724800	Weak transcription	Adipose Nuclei	Adipose
30	chr9:116720800-116731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:116720800-116736400	Weak transcription	Aorta	Aorta
32	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:116721000-116724400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:116721000-116725000	Weak transcription	Osteobl	bone
35	chr9:116721000-116725800	Weak transcription	Stomach Mucosa	stomach
36	chr9:116721000-116726000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:116721000-116726000	Weak transcription	Right Atrium	heart
38	chr9:116721000-116726400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:116721000-116728000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:116721000-116728000	Weak transcription	HSMM	muscle
41	chr9:116721000-116728200	Weak transcription	Ovary	ovary
42	chr9:116721000-116731200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:116721000-116731400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:116721000-116731400	Weak transcription	HMEC	breast
45	chr9:116721200-116723000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:116721200-116723400	Strong transcription	HUVEC	blood vessel
47	chr9:116721200-116724800	Weak transcription	Fetal Kidney	kidney
48	chr9:116721200-116724800	Weak transcription	Lung	lung
49	chr9:116721200-116726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:116721200-116726000	Weak transcription	Pancreas	Pancrea

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