Variant report

Variant	rs2764044
Chromosome Location	chr6:56034764-56034765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1205110	0.95[AFR][1000 genomes]
rs1211240	0.87[AFR][1000 genomes]
rs2745368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2764045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2840993	0.92[AFR][1000 genomes]
rs2840996	0.85[AFR][1000 genomes]
rs35583895	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445357	0.85[AFR][1000 genomes]
rs73461350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
2	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56021800-56035800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:56021800-56036800	Weak transcription	Placenta	Placenta
5	chr6:56021800-56053200	Weak transcription	Aorta	Aorta
6	chr6:56028800-56035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:56032000-56035000	Weak transcription	Fetal Lung	lung
8	chr6:56033400-56035400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:56034400-56036800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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