Variant report

Variant	rs2764046
Chromosome Location	chr6:56015363-56015364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56014723..56016449-chr6:56018115..56020080,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1022539	0.90[CHB][hapmap]
rs1033478	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs12199712	0.90[CHB][hapmap]
rs12199742	0.90[CHB][hapmap]
rs1319111	0.81[CHB][hapmap]
rs1319112	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs13193925	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs13209836	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1480	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs1555097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1925141	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1925143	0.90[CHB][hapmap]
rs1925147	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs1925179	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs1925181	0.84[JPT][hapmap]
rs1925185	0.90[CHB][hapmap]
rs1925189	0.90[CHB][hapmap]
rs1980487	0.90[CHB][hapmap]
rs2038149	0.90[CHB][hapmap]
rs2206674	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs2328677	0.95[CEU][hapmap]
rs2397204	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs2397208	0.89[CHB][hapmap]
rs2745366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2764052	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2841000	0.82[CEU][hapmap];0.90[CHB][hapmap]
rs2841006	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2841007	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs3817983	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs3846918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3846920	1.00[CEU][hapmap]
rs3846921	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3846922	0.90[CHB][hapmap]
rs3857611	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3857612	0.81[CHB][hapmap]
rs3996940	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4119567	0.90[CHB][hapmap]
rs4126558	0.89[CHB][hapmap]
rs4379279	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs4495274	0.90[CHB][hapmap]
rs4573075	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs4596475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4599643	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs4712113	1.00[CHB][hapmap]
rs4715585	0.90[CHB][hapmap]
rs4715591	0.82[CEU][hapmap];0.90[CHB][hapmap]
rs4715597	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs6459128	0.90[CHB][hapmap]
rs6459133	0.90[CHB][hapmap]
rs6459136	0.90[CHB][hapmap]
rs6909268	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6914495	0.90[CHB][hapmap]
rs6927919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6933151	0.90[CHB][hapmap]
rs6939465	0.90[CHB][hapmap]
rs7774374	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs9296828	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs9296830	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs9357891	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs9370485	0.90[CHB][hapmap]
rs9370486	0.90[CHB][hapmap]
rs9382583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9396176	0.88[CHB][hapmap]
rs9475593	0.89[CHB][hapmap]
rs9475621	0.90[CHB][hapmap]
rs994667	1.00[CEU][hapmap];0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
3	chr6:55999000-56021200	Weak transcription	Aorta	Aorta
4	chr6:56006600-56015400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:56006600-56018600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:56010000-56016600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:56011600-56018600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:56011600-56018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:56014000-56016600	Weak transcription	Fetal Lung	lung
11	chr6:56014800-56018200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:56015200-56015600	Weak transcription	Fetal Stomach	stomach

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