Variant report

Variant	rs2764058
Chromosome Location	chr6:55977464-55977465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1205109	0.88[AMR][1000 genomes]
rs1555097	0.86[AMR][1000 genomes]
rs1925177	0.86[AMR][1000 genomes]
rs2745366	0.86[AMR][1000 genomes]
rs2764048	0.91[AMR][1000 genomes]
rs2764050	0.81[AMR][1000 genomes]
rs2764052	0.84[AMR][1000 genomes]
rs2764055	0.84[AMR][1000 genomes]
rs2764056	0.84[AMR][1000 genomes]
rs2764059	0.84[AMR][1000 genomes]
rs2840989	0.91[AMR][1000 genomes]
rs2840990	0.91[AMR][1000 genomes]
rs2841006	0.84[AMR][1000 genomes]
rs2841007	0.83[AMR][1000 genomes]
rs3846918	0.86[AMR][1000 genomes]
rs4573075	0.84[AMR][1000 genomes]
rs4596475	0.82[AMR][1000 genomes]
rs6459124	0.84[AMR][1000 genomes]
rs6459127	0.80[AMR][1000 genomes]
rs6927919	0.83[AMR][1000 genomes]
rs9475560	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55956600-55978400	Weak transcription	Aorta	Aorta
3	chr6:55960600-55977800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:55960600-55978000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:55967800-56008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:55977000-55978800	Strong transcription	Fetal Lung	lung
7	chr6:55977200-55978400	Strong transcription	Fetal Stomach	stomach
8	chr6:55977200-55978600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:55977400-55979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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