Variant report

Variant	rs276433
Chromosome Location	chr9:15621105-15621106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10118359	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10121393	0.82[EUR][1000 genomes]
rs10121591	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10123042	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10733295	0.82[EUR][1000 genomes]
rs10756677	0.95[ASN][1000 genomes]
rs10756678	0.95[ASN][1000 genomes]
rs10756680	0.84[ASN][1000 genomes]
rs10756686	0.91[ASN][1000 genomes]
rs10756687	0.84[ASN][1000 genomes]
rs10756688	0.88[ASN][1000 genomes]
rs10756689	0.88[ASN][1000 genomes]
rs10810409	0.92[ASN][1000 genomes]
rs10810416	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810419	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810422	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810424	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810426	0.84[EUR][1000 genomes]
rs10810427	0.82[EUR][1000 genomes]
rs10810429	0.80[EUR][1000 genomes]
rs10810430	0.80[EUR][1000 genomes]
rs10962098	0.91[ASN][1000 genomes]
rs10962099	0.91[ASN][1000 genomes]
rs10962106	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10962121	0.80[EUR][1000 genomes]
rs10962123	0.80[EUR][1000 genomes]
rs10962126	0.80[EUR][1000 genomes]
rs11792937	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12004358	0.80[EUR][1000 genomes]
rs12340969	0.84[ASN][1000 genomes]
rs12352779	0.81[EUR][1000 genomes]
rs13301516	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1355171	0.82[EUR][1000 genomes]
rs1533040	0.86[ASN][1000 genomes]
rs169342	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs183928	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1848582	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs192466	0.84[EUR][1000 genomes]
rs2175080	0.80[EUR][1000 genomes]
rs2175082	0.84[ASN][1000 genomes]
rs2457265	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2663300	0.85[EUR][1000 genomes]
rs276432	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276435	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs276436	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs276441	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs276443	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs276444	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs276448	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs276449	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs276453	0.83[EUR][1000 genomes]
rs276454	0.84[EUR][1000 genomes]
rs276455	0.85[EUR][1000 genomes]
rs2821545	0.83[EUR][1000 genomes]
rs3119699	0.82[EUR][1000 genomes]
rs3122702	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35057009	0.80[EUR][1000 genomes]
rs432452	0.89[EUR][1000 genomes]
rs433849	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs442549	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs451878	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4740614	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4740619	0.91[ASN][1000 genomes]
rs4740620	0.86[ASN][1000 genomes]
rs4740621	0.85[ASN][1000 genomes]
rs4741516	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4741517	0.95[ASN][1000 genomes]
rs4741519	0.96[ASN][1000 genomes]
rs4741520	0.88[ASN][1000 genomes]
rs4741528	0.88[ASN][1000 genomes]
rs62573118	0.80[EUR][1000 genomes]
rs6474930	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6474931	0.93[ASN][1000 genomes]
rs6474942	0.84[ASN][1000 genomes]
rs6474944	0.82[ASN][1000 genomes]
rs6474945	0.82[ASN][1000 genomes]
rs6474946	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6474951	0.80[EUR][1000 genomes]
rs6474952	0.80[EUR][1000 genomes]
rs7023275	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7025669	0.88[ASN][1000 genomes]
rs7030846	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7031365	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7032755	0.85[ASN][1000 genomes]
rs7032877	0.85[ASN][1000 genomes]
rs7034484	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7035863	0.82[EUR][1000 genomes]
rs7036172	0.88[ASN][1000 genomes]
rs7036674	0.88[ASN][1000 genomes]
rs7036875	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7037662	0.80[EUR][1000 genomes]
rs7042475	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7046351	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7049101	0.85[ASN][1000 genomes]
rs7389047	0.82[ASN][1000 genomes]
rs770524	0.84[EUR][1000 genomes]
rs7848511	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7851056	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7859780	0.97[ASN][1000 genomes]
rs7863088	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7873152	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7875367	0.82[EUR][1000 genomes]
rs9407624	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv969752	chr9:15615716-15639356	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15609800-15625800	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:15611200-15628200	Weak transcription	Thymus	Thymus
3	chr9:15613000-15622400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:15614200-15622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:15614200-15629800	Weak transcription	Fetal Lung	lung
6	chr9:15614400-15623200	Weak transcription	Fetal Thymus	thymus
7	chr9:15614400-15627400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:15614400-15645000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:15618200-15628200	Weak transcription	Fetal Stomach	stomach
10	chr9:15618400-15627600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:15618800-15629000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:15619200-15623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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