Variant report

Variant	rs2779507
Chromosome Location	chr9:14830010-14830011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10961700	1.00[YRI][hapmap]
rs12683064	0.82[CHD][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap]
rs1494346	0.84[CHD][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap]
rs2642406	0.83[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2642414	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2818939	0.82[CHD][hapmap];0.81[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9792612	0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9792613	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1030626	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv540071	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv613646	chr9:14800779-14852141	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1031440	chr9:14805107-14859190	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv540072	chr9:14805107-14859190	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892618	chr9:14811971-14844777	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv892619	chr9:14821819-14866389	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
2	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
3	chr9:14801800-14857200	Strong transcription	HepG2	liver
4	chr9:14807400-14868600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:14809200-14847600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:14810200-14831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:14810400-14849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:14814200-14842200	Weak transcription	Pancreas	Pancrea
9	chr9:14815200-14831800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:14823400-14848400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:14824000-14852800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:14825000-14841400	Weak transcription	Fetal Intestine Large	intestine
13	chr9:14826000-14849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:14827200-14831400	Weak transcription	Adipose Nuclei	Adipose
15	chr9:14828000-14830200	Weak transcription	Fetal Stomach	stomach
16	chr9:14828200-14830600	Weak transcription	Aorta	Aorta
17	chr9:14828200-14830600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:14828200-14832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:14828800-14831800	Strong transcription	Fetal Kidney	kidney
20	chr9:14829400-14832200	Strong transcription	Colon Smooth Muscle	Colon
21	chr9:14829400-14834600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:14829600-14831000	Strong transcription	Fetal Muscle Leg	muscle
23	chr9:14829800-14833400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:14830000-14830400	ZNF genes & repeats	Fetal Lung	lung
25	chr9:14830000-14832200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:14830000-14833400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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