Variant report

Variant rs2781530
Chromosome Location chr9:72056397-72056398
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:72036600-72082600 Weak transcription Rectal Smooth Muscle rectum
2 chr9:72040800-72057400 Weak transcription Fetal Heart heart
3 chr9:72041200-72069600 Weak transcription Gastric stomach
4 chr9:72042000-72070400 Weak transcription Spleen Spleen
5 chr9:72042800-72063800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr9:72043200-72063800 Weak transcription Brain Substantia Nigra brain
7 chr9:72044200-72084400 Weak transcription Fetal Intestine Small intestine
8 chr9:72045000-72084400 Weak transcription Fetal Intestine Large intestine
9 chr9:72045800-72064200 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr9:72046000-72056400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr9:72046400-72085600 Weak transcription Colon Smooth Muscle Colon
12 chr9:72047000-72056600 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr9:72047000-72056800 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr9:72047000-72081800 Weak transcription Fetal Kidney kidney
15 chr9:72048000-72068600 Weak transcription Left Ventricle heart
16 chr9:72049000-72059000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr9:72049200-72059000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr9:72054000-72073200 Weak transcription Right Ventricle heart
19 chr9:72054400-72057400 Weak transcription Placenta Placenta
20 chr9:72054800-72056800 Weak transcription Fetal Muscle Trunk muscle
21 chr9:72055200-72057200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr9:72055200-72057400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr9:72055200-72073000 Strong transcription Liver Liver
24 chr9:72055400-72056400 ZNF genes & repeats H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr9:72055400-72056600 Enhancers Primary T cells from cord blood blood
26 chr9:72055400-72057200 Strong transcription Aorta Aorta
27 chr9:72055400-72057400 Strong transcription Fetal Stomach stomach
28 chr9:72055400-72059400 Strong transcription Fetal Brain Female brain
29 chr9:72055400-72059600 Strong transcription Ovary ovary
30 chr9:72055600-72056400 Enhancers Primary T helper naive cells from peripheral blood blood
31 chr9:72055600-72056400 Enhancers Primary T helper naive cells fromperipheralblood blood
32 chr9:72055600-72056400 Enhancers Primary T killer naive cells fromperipheralblood blood
33 chr9:72055600-72056600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr9:72055600-72056600 Strong transcription Brain Angular Gyrus brain
35 chr9:72055600-72056600 Strong transcription Brain Inferior Temporal Lobe brain
36 chr9:72055600-72056800 Enhancers Primary T helper cells fromperipheralblood blood
37 chr9:72055600-72056800 Strong transcription Cortex derived primary cultured neurospheres brain
38 chr9:72055600-72057000 Enhancers Fetal Thymus thymus
39 chr9:72055600-72057200 Strong transcription Brain Anterior Caudate brain
40 chr9:72055600-72057200 Strong transcription Stomach Smooth Muscle stomach
41 chr9:72055600-72057400 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr9:72055600-72057400 Strong transcription Adipose Nuclei Adipose
43 chr9:72055600-72057400 Strong transcription Brain Germinal Matrix brain
44 chr9:72055600-72064000 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr9:72055800-72056400 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
46 chr9:72055800-72056400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr9:72055800-72057200 Strong transcription Brain Hippocampus Middle brain
48 chr9:72056000-72082600 Weak transcription Pancreas Pancrea
49 chr9:72056200-72056600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
50 chr9:72056200-72056600 Strong transcription Fetal Adrenal Gland Adrenal Gland

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