Variant report

Variant	rs2782771
Chromosome Location	chr1:71218098-71218099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12040186	1.00[AMR][1000 genomes]
rs12057342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080162	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12097022	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1889598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1932050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2152123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2820541	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2820542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34745168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35615554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55884889	1.00[AMR][1000 genomes]
rs915220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71217000-71218400	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:71217200-71218200	Enhancers	K562	blood
3	chr1:71217200-71218600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:71217800-71218200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:71217800-71219200	Enhancers	Placenta	Placenta
6	chr1:71218000-71218800	Enhancers	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links